CX674601

Overview
NameCX674601
Unique NameCX674601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674601 vs. ExPASy Swiss-Prot
Match: EFTU_BLOFL (Elongation factor Tu OS=Blochmannia floridanus GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.968e-11
Identity = 57/197 (28.93%), Postives = 94/197 (47.72%), Query Frame = -1
Query:  283 PLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 861
            P++DV+ I G GTV  GRVE+G++K G  V     G+   VK+    +EM  + L E   G+NVG  ++     +++RG V   SK    +  +NF S+V I+N     G  + P    +      + +++   I      EL KE + +  GD   + +    P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  214 PIEDVFSISGRGTVVTGRVESGIIKVGEEVEI--VGIKDTVKTTCTGIEMFRKLLDEGRAGENVGVLLRGTKRDEVERGQVL--SKPGCIKPHSNFESEVYILNK--DEGGRHTPFFKGYRPQFYFRTTDVTGTI------ELPKEVEMVMPGDNIKMVVHLISPIAMDDGL------RFAIREGGRTVGAGVVSRV 392          
BLAST of CX674601 vs. ExPASy Swiss-Prot
Match: EFTU_ASTLO (Elongation factor Tu, plastid OS=Astasia longa GN=tufA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.968e-11
Identity = 54/199 (27.14%), Postives = 93/199 (46.73%), Query Frame = -1
Query:  283 LQDVYKIGGIGTVPVGRVETGVLKPGMVVTF-GPSGL-TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLG-----RFAVRDMRQTVAVGVIKSV 858
            ++DV  I G GTV  GR+E G +K G  V   G   + +T +  +EM  ++L EA+ GDNVG  ++ +   +++RG V   +K    +    F SQV I+    + G  + P  + +     V+ +++  KI+              K+ D   V+M+     +        P+      RFA+R+  +TV  GVI ++
Sbjct:  225 IEDVLSITGRGTVATGRIERGKIKVGETVELIGLKNIKSTTITGLEMFQKSLDEAIAGDNVGVLLRGIQKNEVERGMVI--AKPGTIQPHIKFNSQVYILTK--EEGGRHTPFFEGYKPQFYVRTTDVTGKIES------------FKSDDGTTVQMVMPGDKIKMIVELVQPIAIEKGMRFAIREGGKTVGAGVIINI 407          
BLAST of CX674601 vs. ExPASy Swiss-Prot
Match: EFTU_THICU (Elongation factor Tu OS=Thiobacillus cuprinus GN=tuf PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 53/196 (27.04%), Postives = 94/196 (47.96%), Query Frame = -1
Query:  283 PLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 861
            P++DV+ I G GTV  GRVE G++K G    +V   P+ L T    VEM  + L +   GDNVG  ++    ++++RG V    K    +   +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  216 PVEDVFSISGRGTVVTGRVERGIIKVGEEIEIVGLKPT-LKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREEVERGQVL--CKPGSIKPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGAI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of CX674601 vs. ExPASy Swiss-Prot
Match: EFTU_PORYE (Elongation factor Tu, chloroplastic OS=Porphyra yezoensis GN=tufA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 52/198 (26.26%), Postives = 94/198 (47.47%), Query Frame = -1
Query:  277 LQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 858
            ++DV+ I G GTV  GR+E G++K G  +     GL    TT +  +EM  + L+E L GDN+G  ++ V  KD++RG V   +K         F ++V I+    + G  + P    +     V+ +++   I++ +  +   + + +  GD   +       + +E         RFA+R+  +TV  GV+  + K
Sbjct:  225 VEDVFSITGRGTVATGRIERGIIKVGDTIEI--VGLRETRTTTITGLEMFQKTLEEGLAGDNIGILLRGVQKKDIERGMVL--AKPGTITPHTQFEAEVYILTK--EEGGRHTPFFPGYRPQFYVRTTDVTGTINQFTADD-GTDAEMVMPGDRIKMTAELINAIAIEQGM------RFAIREGGRTVGAGVVSKILK 409          
BLAST of CX674601 vs. ExPASy Swiss-Prot
Match: EFTU_PORPU (Elongation factor Tu, chloroplastic OS=Porphyra purpurea GN=tufA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 52/198 (26.26%), Postives = 94/198 (47.47%), Query Frame = -1
Query:  277 LQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 858
            ++DV+ I G GTV  GR+E G++K G  +     GL    TT +  +EM  + L+E L GDN+G  ++ V  KD++RG V   +K         F ++V I+    + G  + P    +     V+ +++   I++ +  +   + + +  GD   +       + +E         RFA+R+  +TV  GV+  + K
Sbjct:  225 VEDVFSITGRGTVATGRIERGIIKVGDTIEI--VGLRETRTTTITGLEMFQKTLEEGLAGDNIGILLRGVQKKDIERGMVL--AKPGTITPHTQFEAEVYILTK--EEGGRHTPFFPGYRPQFYVRTTDVTGTINQFTADD-GTDAEMVMPGDRIKMTAELINAIAIEQGM------RFAIREGGRTVGAGVVSKILK 409          
BLAST of CX674601 vs. ExPASy Swiss-Prot
Match: EFTU_PELPD (Elongation factor Tu OS=Pelobacter propionicus (strain DSM 2379) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 53/195 (27.18%), Postives = 92/195 (47.18%), Query Frame = -1
Query:  283 PLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 861
            P++DV+ I G GTV  GRVE G++K G  V       T  T V  VEM  + L E   GDN+G  ++ +  ++++RG V   +K         F ++  I+N   + G  + P  + +      + +++   +D  +G E+      +  GD   V +    P+ ++         RFA+R+  +TV  GV+ S+
Sbjct:  216 PVEDVFSISGRGTVATGRVERGIVKVGEEVEIVGIKATAKTTVTGVEMFRKLLDEGRAGDNIGALLRGIKREEIERGQVL--AKPGSITPHTKFKAEAYILNK--EEGGRHTPFFNGYRPQFYFRTTDVTGIVDLPAGTEM------VMPGDNVAVTVNLITPIAMDEGL------RFAIREGGRTVGAGVVSSI 394          
BLAST of CX674601 vs. ExPASy Swiss-Prot
Match: EFTU_HERAR (Elongation factor Tu OS=Herminiimonas arsenicoxydans GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 51/196 (26.02%), Postives = 95/196 (48.47%), Query Frame = -1
Query:  283 PLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 861
            P++DV+ I G GTV  GR+E G++K G    +V    + +TT    VEM  + L +   GDNVG  ++    +D++RG V   +K    +   +FT ++ +++     G  + P  + +      + +++   I      EL K+ + +  GD   + ++   P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  216 PVEDVFSISGRGTVVTGRIERGIVKVGESLEIVGIRDTQVTT-CTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVL--AKPGSIKPHKHFTGEIYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVMLINPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of CX674601 vs. ExPASy Swiss-Prot
Match: EFTU_GEOSL (Elongation factor Tu OS=Geobacter sulfurreducens GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 54/195 (27.69%), Postives = 91/195 (46.67%), Query Frame = -1
Query:  283 PLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 861
            P++DV+ I G GTV  GRVE G++K G  V       T  T V  VEM  + L E   GDN+G  ++ V  +D++RG V   +K         F ++  I+    + G  + P  + +      + +++   +D  +G E+      +  GD   V +    P+ ++         RFA+R+  +TV  GV+ S+
Sbjct:  216 PVEDVFSISGRGTVATGRVERGIVKVGEEVEIVGIKATAKTTVTGVEMFRKLLDEGRAGDNIGALLRGVKREDIERGQVL--AKPGSITPHTKFKAEAYILTK--EEGGRHTPFFNGYRPQFYFRTTDVTGVVDLPAGTEM------VMPGDNVAVTINLITPIAMDEGL------RFAIREGGRTVGAGVVSSI 394          
BLAST of CX674601 vs. ExPASy Swiss-Prot
Match: EFTU_FERIS (Elongation factor Tu OS=Fervidobacterium islandicum GN=tuf PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 55/199 (27.64%), Postives = 97/199 (48.74%), Query Frame = -1
Query:  283 PLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVK-----SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKI-DRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 861
            P++DV+ I G GTV  GR+E GV+KPG+       G++ E+K     SVEM  + L EA+ GDNVG  ++  +  +++RG V   +K         F + + ++    + G  + P    +     ++ +++  +I D  +G E+      +  GD   + +    P+ +E         RFAVR+  +TV  GV+  +
Sbjct:  217 PIEDVFSITGRGTVVTGRIERGVIKPGVEAEI--IGMSYEIKKTVITSVEMFRKELDEAIAGDNVGCLLRGSSKDEVERGQVL--AKPGSITPLKKFKANIYVLKK--EEGGRHTPFTKGYKPQFYIRTADVTGEIVDLPAGVEM------VMPGDNVEMTIELIYPVAIEKGM------RFAVREGGRTVGAGVVSEI 397          
BLAST of CX674601 vs. ExPASy Swiss-Prot
Match: EFTU1_SOYBN (Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 56/194 (28.87%), Postives = 92/194 (47.42%), Query Frame = -1
Query:  283 LQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 858
            ++DV+ I G GTV  GRVE G +K G  V       T  T V  VEM  + L EAL GDNVG  ++ V   D++RG V   +K         F++ V ++    + G  ++P    +     ++ +++  K+      + ++E   +  GD   + +    P+  E         RFA+R+  +TV  GVI+S+
Sbjct:  295 VEDVFSITGRGTVATGRVERGTIKVGETVDLVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKTDIQRGMVL--AKPGTITPHTKFSAIVYVLKK--EEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIM-NDKDEESTMVLPGDRVKMVVELIVPVACEQGM------RFAIREGGKTVGAGVIQSI 477          
The following BLAST results are available for this feature:
BLAST of CX674601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 260
Match NameE-valueIdentityDescription
EFTU_BLOFL6.968e-1128.93Elongation factor Tu OS=Blochmannia floridanus GN=... [more]
EFTU_ASTLO6.968e-1127.14Elongation factor Tu, plastid OS=Astasia longa GN=... [more]
EFTU_THICU9.100e-1127.04Elongation factor Tu OS=Thiobacillus cuprinus GN=t... [more]
EFTU_PORYE9.100e-1126.26Elongation factor Tu, chloroplastic OS=Porphyra ye... [more]
EFTU_PORPU9.100e-1126.26Elongation factor Tu, chloroplastic OS=Porphyra pu... [more]
EFTU_PELPD9.100e-1127.18Elongation factor Tu OS=Pelobacter propionicus (st... [more]
EFTU_HERAR9.100e-1126.02Elongation factor Tu OS=Herminiimonas arsenicoxyda... [more]
EFTU_GEOSL9.100e-1127.69Elongation factor Tu OS=Geobacter sulfurreducens G... [more]
EFTU_FERIS9.100e-1127.64Elongation factor Tu OS=Fervidobacterium islandicu... [more]
EFTU1_SOYBN9.100e-1128.87Elongation factor Tu, chloroplastic OS=Glycine max... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_7E06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E06-J11-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674601 ID=CX674601; Name=CX674601; organism=Citrus sinensis; type=EST; length=861bp
TTTTTTTTTTAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAACA
AAATGTTTGACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAACTCA
ATGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCTACCGTAAAACA
AACTAAAACATGACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTA
TAGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCAGCAGACTTG
GTGACCTTGGCACCCGATGGATCCTTCTTTTCAACACTCTTGATCACACC
AACAGCTACAGTCTGACGCATGTCCCTAACAGCAAAACGACCAAGGGGTG
GGTAGTCGGAGAAGGTCTCAACAACCATGGGCTTGGTGGGAATCATCTTA
ACCATTCCGGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTC
CTTGCCAGATCGCCTGTCAATCTTGGTCACAAGCTCAGAAAACTTGACAG
CAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATC
TGGCCAGGATGGTTCATGATGATGACCTGTGAAGTGAAGTTGGCAGCTTC
CCTGGCCGGATCATCCTTCGAGTTGGAAGCAACAAAACCACGCTTGAGAT
CCTTGACAGCAACGTTCTTCACGTTGAAGCCAACATTGTCACCCGGAAGG
GCCTCCTGCAGAGCTTCGTGGTGCATCTCAACAGACTTAACCTCAGTTGT
CAATCCAGAGGGACCAAATGTCACCACCATACCAGGCTTGAGCACACCGG
TCTCAACGCGACCCACTGGGACGGTTCCAATGCCACCAATCTTGTACACG
TCCTGGAGTGG
back to top