CV886715

Overview
NameCV886715
Unique NameCV886715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV886715_ssr117 microsatellite CV886715_ssr117:117..128. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_HUMAN (40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 40/70 (57.14%), Postives = 59/70 (84.29%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 367
            +NN+VLFD+ATYDKL  E P +KLITP+++S+RL+I GSLAR A+++L+++G I+++S H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_BOVIN (40S ribosomal protein S25 OS=Bos taurus GN=RPS25 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 40/70 (57.14%), Postives = 59/70 (84.29%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 367
            +NN+VLFD+ATYDKL  E P +KLITP+++S+RL+I GSLAR A+++L+++G I+++S H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_DANRE (40S ribosomal protein S25 OS=Danio rerio GN=rps25 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.089e-18
Identity = 40/70 (57.14%), Postives = 58/70 (82.86%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 367
            +NN+VLFD+ATYDKL  E P +KLITP+++S+RL+I GSLAR A+++L+ +G I+++S H +Q IYTR T
Sbjct:   43 LNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALQELLGKGLIKLVSKHRAQVIYTRNT 112          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_ICTPU (40S ribosomal protein S25 OS=Ictalurus punctatus GN=rps25 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.953e-18
Identity = 40/70 (57.14%), Postives = 58/70 (82.86%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 367
            +NN+VLFD+ATYDKL  E P +KLITP+++S+RL+I GSLAR A+ +L+++G I+++S H +Q IYTR T
Sbjct:   43 LNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALLELLSKGMIKLVSKHRAQVIYTRNT 112          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_DROME (40S ribosomal protein S25 OS=Drosophila melanogaster GN=RpS25 PE=3 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 367
            +NN VLFD+ATY+KL  E P +KLITPS++S+RL+I GSLA+RA+ +L  +G I+ +  H SQ IYTRAT
Sbjct:   43 LNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRAT 112          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_SPOFR (40S ribosomal protein S25 OS=Spodoptera frugiperda GN=RpS25 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.699e-16
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 367
            +NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLARRA+ +L  +G I+ +  H  Q IYTRAT
Sbjct:   43 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 112          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_CAEEL (40S ribosomal protein S25 OS=Caenorhabditis elegans GN=rps-25 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.699e-16
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 367
            +NNMVLFDQATYDKL  E   +KLITPS++S+RL++  SLA+  +K+L A+G ++ +  H  Q +YTRAT
Sbjct:   40 LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRAT 109          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_LEIIN (40S ribosomal protein S25 OS=Leishmania infantum GN=RPS25 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 361
            + N V+FD+ TYDKL SE PK+KLITPSI+SDRL+I  S+A   +K L     IR++S  +  ++YTR
Sbjct:   36 LQNAVMFDKETYDKLRSEVPKYKLITPSIISDRLKIAVSIAAAGLKQLCREKLIRLVSCSSKTRVYTR 103          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_DICDI (40S ribosomal protein S25 OS=Dictyostelium discoideum GN=rps25 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 34/69 (49.28%), Postives = 51/69 (73.91%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRA 364
            +NN +LFD+ TY KLL E P  K+IT +++S+R++ NGSLARRAIK+L+++G I+ I       +YT+A
Sbjct:   41 LNNAILFDKETYAKLLKEMPTAKVITTAVVSERMKCNGSLARRAIKELLSKGLIKQIIKGHGNGVYTKA 109          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25B_SCHPO (40S ribosomal protein S25-B OS=Schizosaccharomyces pombe GN=rps25b PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  173 LFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRA 364
            +FD++  D++  E P FK I+ S+L DR++INGSLAR AI+DL  RG I+ +  H+ Q IYTRA
Sbjct:   21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTRA 84          
The following BLAST results are available for this feature:
BLAST of CV886715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RS25_HUMAN4.662e-1857.1440S ribosomal protein S25 OS=Homo sapiens GN=RPS25... [more]
RS25_BOVIN4.662e-1857.1440S ribosomal protein S25 OS=Bos taurus GN=RPS25 P... [more]
RS25_DANRE6.089e-1857.1440S ribosomal protein S25 OS=Danio rerio GN=rps25 ... [more]
RS25_ICTPU7.953e-1857.1440S ribosomal protein S25 OS=Ictalurus punctatus G... [more]
RS25_DROME6.732e-1758.5740S ribosomal protein S25 OS=Drosophila melanogast... [more]
RS25_SPOFR5.699e-1654.2940S ribosomal protein S25 OS=Spodoptera frugiperda... [more]
RS25_CAEEL5.699e-1654.2940S ribosomal protein S25 OS=Caenorhabditis elegan... [more]
RS25_LEIIN1.006e-1251.4740S ribosomal protein S25 OS=Leishmania infantum G... [more]
RS25_DICDI1.006e-1249.2840S ribosomal protein S25 OS=Dictyostelium discoid... [more]
RS25B_SCHPO1.112e-1151.5640S ribosomal protein S25-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_024G09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_024_T3_G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886715 ID=CV886715; Name=CV886715; organism=Citrus sinensis; type=EST; length=643bp
ATCTGCTCTTCTCTCCGAAACCTTTACTGCATTTCCATCAAGCAGCACAA
TGGCACCGAAGAAGGATAAGGCCCCACCTCCGGCCTCAAAGCCAGCAAAG
TCTGGTGGAGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAA
GGAGAAGGTGAACAATATGGTTTTGTTCGACCAGGCAACCTATGATAAGC
TTCTTTCTGAGGCCCCCAAGTTTAAGCTTATTACTCCTTCAATCCTATCT
GACAGACTGAGGATAAATGGATCATTGGCACGTCGGGCTATCAAGGATTT
GATGGCAAGAGGTTCCATCCGGATGATATCAGCTCATGCTAGCCAGCAGA
TTTACACCAGAGCCACCAATACCTAGATGAGGATAACCCTTTCATCACTC
CATGGATAGATAGATTGTTTCTGCTCTGTTTCAGGGAACTAGTGCTTAGA
ACCTTTTTGGTACTTTGTGCCTGAAATTTTGTTTCTTATGCTTTTTGATA
TTCTTGATGATAGACAGAAATTTTTTATGTTAGTGAAATCAATTAATGGT
TTTTTTTTTTTACCCCTTTCGGTTACAATTAAAGATGTTGAAACAAAGGT
TATTTGGTGAGAAATATTCAATATTTACTTTGCTTCCTATTAA
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