CV886715

Overview
NameCV886715
Unique NameCV886715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV886715_ssr117 microsatellite CV886715_ssr117:117..128. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25A_YEAST (40S ribosomal protein S25-A OS=Saccharomyces cerevisiae GN=RPS25A PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  170 VLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 367
            V+ DQ  YD++L E P ++ ++ S+L DRL+I GSLAR A++ L   G I+ IS H+ Q IYTRAT
Sbjct:   40 VILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRAT 105          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_NEUCR (40S ribosomal protein S25 OS=Neurospora crassa GN=rps-25 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  170 VLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRA 364
            V+ D++T DKL  +   ++L+T + L DRL+INGSLARR +KDL  +G I+ +  H+  +IYTRA
Sbjct:   28 VILDKSTSDKLYKDVQSYRLVTVATLVDRLKINGSLARRCLKDLEEKGQIKQVVGHSKMKIYTRA 92          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25A_SCHPO (40S ribosomal protein S25-A OS=Schizosaccharomyces pombe GN=rps25a PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  173 LFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 361
            +FD++  D++  E P FK I+ S+L DR++INGSLAR AI+DL  RG I+ +  H+ Q IYTR
Sbjct:   21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTR 83          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25B_YEAST (40S ribosomal protein S25-B OS=Saccharomyces cerevisiae GN=RPS25B PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.520e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  170 VLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRA 364
            V+ DQ  YD++L E P ++ ++ S+L DRL+I GSLAR A++ L   G I+ IS H+ Q IYTRA
Sbjct:   40 VILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRA 104          
The following BLAST results are available for this feature:
BLAST of CV886715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RS25A_YEAST1.453e-1150.0040S ribosomal protein S25-A OS=Saccharomyces cerev... [more]
RS25_NEUCR1.897e-1147.6940S ribosomal protein S25 OS=Neurospora crassa GN=... [more]
RS25A_SCHPO3.236e-1150.7940S ribosomal protein S25-A OS=Schizosaccharomyces... [more]
RS25B_YEAST5.520e-1149.2340S ribosomal protein S25-B OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_024G09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_024_T3_G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886715 ID=CV886715; Name=CV886715; organism=Citrus sinensis; type=EST; length=643bp
ATCTGCTCTTCTCTCCGAAACCTTTACTGCATTTCCATCAAGCAGCACAA
TGGCACCGAAGAAGGATAAGGCCCCACCTCCGGCCTCAAAGCCAGCAAAG
TCTGGTGGAGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAA
GGAGAAGGTGAACAATATGGTTTTGTTCGACCAGGCAACCTATGATAAGC
TTCTTTCTGAGGCCCCCAAGTTTAAGCTTATTACTCCTTCAATCCTATCT
GACAGACTGAGGATAAATGGATCATTGGCACGTCGGGCTATCAAGGATTT
GATGGCAAGAGGTTCCATCCGGATGATATCAGCTCATGCTAGCCAGCAGA
TTTACACCAGAGCCACCAATACCTAGATGAGGATAACCCTTTCATCACTC
CATGGATAGATAGATTGTTTCTGCTCTGTTTCAGGGAACTAGTGCTTAGA
ACCTTTTTGGTACTTTGTGCCTGAAATTTTGTTTCTTATGCTTTTTGATA
TTCTTGATGATAGACAGAAATTTTTTATGTTAGTGAAATCAATTAATGGT
TTTTTTTTTTTACCCCTTTCGGTTACAATTAAAGATGTTGAAACAAAGGT
TATTTGGTGAGAAATATTCAATATTTACTTTGCTTCCTATTAA
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