CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SYNY3 (30S ribosomal protein S5 OS=Synechocystis sp. (strain PCC 6803) GN=rpsE PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.057e-25
Identity = 66/161 (40.99%), Postives = 93/161 (57.76%), Query Frame = -1
Query:  198 KTKKEKVKD-GFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 677
            KT +EK +D  ++E                +L FRAI                       V+K   D ++ ++ VP+TK  +  H ++G  G AKV++RPA+PGTGVIAGGAVR VLE+AGV+N L KQLGSNN LNNARA + A++ ++ + EV+ ERG+
Sbjct:    6 KTSREKKEDTNWQERVIQIRRVSKVVKGGKKLSFRAIVVVGNETGQVGVGVGKAGDVIGAVRKGVADGKKQLIEVPLTKSNSITHITNGVSGGAKVVVRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSNNPLNNARAAINALETLRTFSEVAEERGV 166          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACAM1 (30S ribosomal protein S5 OS=Acaryochloris marina (strain MBIC 11017) GN=rpsE PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.057e-25
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K   D ++ +V VP+T+  + PH   G  GAAKVM+RPA+PGTGVIAGGAVR VLE+AGV N L KQLGS+N LNNARAT+ A+  ++ + EV+ ERGI
Sbjct:   69 RKGVADGKKQLVEVPLTRSNSIPHPMIGRGGAAKVMMRPAAPGTGVIAGGAVRTVLELAGVRNVLAKQLGSDNPLNNARATLHALASLRTFSEVAGERGI 168          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RR5_PHATR (30S ribosomal protein S5, chloroplastic OS=Phaeodactylum tricornutum GN=rps5 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.687e-25
Identity = 54/100 (54.00%), Postives = 78/100 (78.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+  D R+N++ +P+TK L+ PH   G+FGA KV++RP+  G+GVIAGGAVRIVLE+AGV+N + KQLGSNN LNNARA+V A+Q +    +V+++R +
Sbjct:   76 KKAKTDGRKNLIELPITKALSIPHNVAGNFGACKVIMRPSIEGSGVIAGGAVRIVLEVAGVKNVIAKQLGSNNLLNNARASVCALQNLTTKAQVAKKRNL 175          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SYNP6 (30S ribosomal protein S5 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.817e-25
Identity = 53/102 (51.96%), Postives = 79/102 (77.45%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++++V VP+T+  + PH S G+ GAA+V++RPA+PGTGVIAGGAVR VLE+AGV+N L K+LGS + LNNARA + A+  ++ ++EV++ R IP+
Sbjct:   75 RKGVADGKKHLVNVPLTRDQSIPHPSTGEGGAAQVLIRPAAPGTGVIAGGAVRTVLELAGVKNVLAKRLGSKSPLNNARAALEALSSLRTFQEVAQSRDIPV 176          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SYNE7 (30S ribosomal protein S5 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsE PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.817e-25
Identity = 53/102 (51.96%), Postives = 79/102 (77.45%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++++V VP+T+  + PH S G+ GAA+V++RPA+PGTGVIAGGAVR VLE+AGV+N L K+LGS + LNNARA + A+  ++ ++EV++ R IP+
Sbjct:   75 RKGVADGKKHLVNVPLTRDQSIPHPSTGEGGAAQVLIRPAAPGTGVIAGGAVRTVLELAGVKNVLAKRLGSKSPLNNARAALEALSSLRTFQEVAQSRDIPV 176          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CYAA5 (30S ribosomal protein S5 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.021e-24
Identity = 64/163 (39.26%), Postives = 94/163 (57.67%), Query Frame = -1
Query:  192 KTKKEKVKDG-FEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 677
            K+ ++K KD  ++E                +L FRAI                       V+K   D ++ ++ V +TK  +  H + G  G AKV++RPA+PGTGVIAGGAVR VLE+AG++N L KQLGSNN LNNARA + A++ ++ + EV++ERG+P+
Sbjct:    6 KSNRDKSKDSNWQERVIQIRRVSKVVKGGKKLSFRAIVVVGNEKGQVGVGVGKAGDVIGAVRKGVADGKKQLIDVSLTKSSSITHVAKGVSGGAKVIVRPAAPGTGVIAGGAVRTVLELAGLKNILAKQLGSNNPLNNARAVINALEGLRTFSEVAQERGVPL 168          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RR5_RHDSA (30S ribosomal protein S5, chloroplastic OS=Rhodomonas salina GN=rps5 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.021e-24
Identity = 55/100 (55.00%), Postives = 78/100 (78.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+  D ++ IV+VP+TK  + PH   G  GAAKV++RP++PG+GVIAGG+VR +LE+AGV+N L KQLGSNN LNNARA   A+ K+K + +V+++RGI
Sbjct:   67 KKAVSDGKKKIVSVPITKDSSIPHIVKGRSGAAKVIMRPSAPGSGVIAGGSVRTILELAGVKNILAKQLGSNNPLNNARAATDALLKLKTFSQVAQDRGI 166          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RR5_CYAPA (30S ribosomal protein S5, cyanelle OS=Cyanophora paradoxa GN=rps5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.333e-24
Identity = 53/100 (53.00%), Postives = 78/100 (78.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+A D ++++V VP+T+  + PH  DG  GAA+V++RP++ GTGVIAGGAVR VLE+AGV N L KQLGSNN LNNARA + A+ ++K + + +++RG+
Sbjct:   67 KKAAADGKKHVVEVPLTRSNSIPHPIDGIGGAARVIMRPSAEGTGVIAGGAVRTVLELAGVRNILAKQLGSNNPLNNARAAMNALSRLKTFSQFAKDRGV 166          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CYAP8 (30S ribosomal protein S5 OS=Cyanothece sp. (strain PCC 8801) GN=rpsE PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.879e-24
Identity = 53/102 (51.96%), Postives = 77/102 (75.49%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++ ++ V +TK  +  H + G  G AKV++RPA+PGTGVIAGGAVR VLE+AGV+N L KQLGS+N LNNARA + A++ ++ + EV++ERG+P+
Sbjct:   67 RKGVADGKKQLIDVSLTKASSITHITRGVSGGAKVIVRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSSNPLNNARAVINALEGLRTFSEVAQERGVPL 168          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SYNS9 (30S ribosomal protein S5 OS=Synechococcus sp. (strain CC9902) GN=rpsE PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.643e-24
Identity = 50/102 (49.02%), Postives = 77/102 (75.49%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++++V VP+T++ + P  S+G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+  ++  +E ++ERGI +
Sbjct:  109 RKGVADGKKHLVKVPLTRHSSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSSLRTHKETAKERGISL 210          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_SYNY32.057e-2540.9930S ribosomal protein S5 OS=Synechocystis sp. (str... [more]
RS5_ACAM12.057e-2558.0030S ribosomal protein S5 OS=Acaryochloris marina (... [more]
RR5_PHATR2.687e-2554.0030S ribosomal protein S5, chloroplastic OS=Phaeoda... [more]
RS5_SYNP67.817e-2551.9630S ribosomal protein S5 OS=Synechococcus sp. (str... [more]
RS5_SYNE77.817e-2551.9630S ribosomal protein S5 OS=Synechococcus elongatu... [more]
RS5_CYAA51.021e-2439.2630S ribosomal protein S5 OS=Cyanothece sp. (strain... [more]
RR5_RHDSA1.021e-2455.0030S ribosomal protein S5, chloroplastic OS=Rhodomo... [more]
RR5_CYAPA1.333e-2453.0030S ribosomal protein S5, cyanelle OS=Cyanophora p... [more]
RS5_CYAP83.879e-2451.9630S ribosomal protein S5 OS=Cyanothece sp. (strain... [more]
RS5_SYNS98.643e-2449.0230S ribosomal protein S5 OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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