CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_HYPNA (30S ribosomal protein S5 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.579e-17
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+  +A+RN+V +P+ +  T  H  +G  GA KV+LR A PGTGVIAGG +R V+E+ GV++ +GK LGS+N  N  RAT  A++     R V+ +RG+
Sbjct:   78 RKATEEAKRNLVRIPLREGRTLHHDGNGRHGAGKVVLRAAPPGTGVIAGGPMRAVMEVLGVQDVVGKSLGSSNPYNMVRATFDALKGQANPRTVASKRGL 177          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_GRAFK (30S ribosomal protein S5 OS=Gramella forsetii (strain KT0803) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.579e-17
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K+  DA++N+V +P+ K  T PH   G +G A+VML PA+ GTG+IAGGA+R VLE  GV + L K  GS+N  N  +AT  A+ +++    V+++RG+ +
Sbjct:   69 KAVEDAKKNLVRIPLHKG-TLPHEQKGKYGGARVMLLPAAAGTGIIAGGAIRAVLESVGVHDVLSKNQGSSNPHNVVKATFDALLQLRSAETVAKQRGVSL 168          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THENN (30S ribosomal protein S5 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.062e-17
Identity = 45/100 (45.00%), Postives = 70/100 (70.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+  DA++N++ VP+    T PH   G   A++V+L+PA+PGTG+IAGG VR V+E+AG++N L K LGS N LN A AT+  ++++   R+V++ R I
Sbjct:   65 RKAIADAKKNVIEVPVING-TIPHEVIGRQDASRVLLKPAAPGTGIIAGGTVRAVVELAGIQNILTKALGSTNPLNLAMATINGLKELLDPRKVAKLRDI 163          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STACT (30S ribosomal protein S5 OS=Staphylococcus carnosus (strain TM300) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.062e-17
Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = -1
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++VTV   +  T PH   G FG+  V+L+PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  ++ +K   EV++ RG
Sbjct:   61 KKAVEAAKKDLVTVNRVEGTT-PHTITGRFGSGSVLLKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATLNGLENLKNAEEVAKLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PELLD (30S ribosomal protein S5 OS=Pelodictyon luteolum (strain DSM 273) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.062e-17
Identity = 44/97 (45.36%), Postives = 66/97 (68.04%), Query Frame = -1
Query:  204 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 494
            K   D ++N+V VP+ K  T PH+    +G+AKV+++PA+PGTG+IAGGAVR VLEMAGV + L K LGS+N  N  +A ++ ++ +    +V+  R
Sbjct:   66 KGVEDGKKNVVKVPIIKG-TIPHQIVAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGVRDVLTKSLGSSNPHNVVKAAILGLKSISDANDVAERR 161          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LACLS (30S ribosomal protein S5 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.062e-17
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A++N++TVPM    T PH + G FG  K++L+PA  G GV AGGAVR VLE+AGV +   K LGSN  +N  RATV  + ++K+  EV+  RG
Sbjct:   64 RKAIEAAKKNLITVPMVG-ATLPHEALGVFGGGKILLKPAVEGAGVAAGGAVRAVLELAGVADVTSKSLGSNTPINVVRATVDGLTQLKRAEEVAALRG 161          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LACLM (30S ribosomal protein S5 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.062e-17
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A++N++TVPM    T PH + G FG  K++L+PA  G GV AGGAVR VLE+AGV +   K LGSN  +N  RATV  + ++K+  EV+  RG
Sbjct:   64 RKAIEAAKKNLITVPMVG-TTLPHEALGVFGGGKILLKPAVEGAGVAAGGAVRAVLELAGVADVTSKSLGSNTPINVVRATVDGLTQLKRAEEVAALRG 161          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_FLAPJ (30S ribosomal protein S5 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.062e-17
Identity = 48/101 (47.52%), Postives = 66/101 (65.35%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K+  DA++N+V +P++   + PH   G FG A+V L PAS GTGVIAGGAVR VLE  G+ + L K  GS+N  N  +AT  A+ +M+    VSR+RGI +
Sbjct:   69 KAVEDAKKNLVKIPLSGK-SVPHEQKGKFGGARVNLMPASHGTGVIAGGAVRSVLESVGIHDVLSKSQGSSNPHNVVKATFDALLQMRSAYTVSRQRGISL 168          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CORGL (30S ribosomal protein S5 OS=Corynebacterium glutamicum GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.062e-17
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK A +AR+N   VPM    T  H   G+  A  VML+PA+PGTGVIAGGA R VLE AG+++ L K LGS+NA+N   ATV  ++++ +  EV+  RG
Sbjct:   94 QKGAEEARKNFFRVPMVNG-TITHPVQGEKAAGIVMLKPAAPGTGVIAGGAARPVLECAGIQDILSKSLGSDNAINVVHATVDGLKQLVRPEEVAARRG 191          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CORGB (30S ribosomal protein S5 OS=Corynebacterium glutamicum (strain R) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.062e-17
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK A +AR+N   VPM    T  H   G+  A  VML+PA+PGTGVIAGGA R VLE AG+++ L K LGS+NA+N   ATV  ++++ +  EV+  RG
Sbjct:   94 QKGAEEARKNFFRVPMVNG-TITHPVQGEKAAGIVMLKPAAPGTGVIAGGAARPVLECAGIQDILSKSLGSDNAINVVHATVDGLKQLVRPEEVAARRG 191          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_HYPNA1.579e-1745.0030S ribosomal protein S5 OS=Hyphomonas neptunium (... [more]
RS5_GRAFK1.579e-1743.5630S ribosomal protein S5 OS=Gramella forsetii (str... [more]
RS5_THENN2.062e-1745.0030S ribosomal protein S5 OS=Thermotoga neapolitana... [more]
RS5_STACT2.062e-1748.4830S ribosomal protein S5 OS=Staphylococcus carnosu... [more]
RS5_PELLD2.062e-1745.3630S ribosomal protein S5 OS=Pelodictyon luteolum (... [more]
RS5_LACLS2.062e-1747.4730S ribosomal protein S5 OS=Lactococcus lactis sub... [more]
RS5_LACLM2.062e-1747.4730S ribosomal protein S5 OS=Lactococcus lactis sub... [more]
RS5_FLAPJ2.062e-1747.5230S ribosomal protein S5 OS=Flavobacterium psychro... [more]
RS5_CORGL2.062e-1749.4930S ribosomal protein S5 OS=Corynebacterium glutam... [more]
RS5_CORGB2.062e-1749.4930S ribosomal protein S5 OS=Corynebacterium glutam... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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