CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RR5_THAPS (30S ribosomal protein S5, chloroplastic OS=Thalassiosira pseudonana GN=rps5 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.643e-24
Identity = 51/98 (52.04%), Postives = 73/98 (74.49%), Query Frame = -1
Query:  204 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 497
            +K+  D R+N++ VP+TK L+ PH   GD GA K+++RP+  G+GVIAGGAVR VLE+AG++N + KQLGS+N LNNAR  +VA++ +    EV R+R
Sbjct:   76 KKAKTDGRKNLIDVPITKSLSIPHAVIGDLGACKIIMRPSIEGSGVIAGGAVRTVLEVAGIKNVIAKQLGSDNLLNNARTAIVALESLTTLDEVKRKR 173          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SYNPW (30S ribosomal protein S5 OS=Synechococcus sp. (strain WH7803) GN=rpsE PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.129e-23
Identity = 50/102 (49.02%), Postives = 77/102 (75.49%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++++V VP+T++ + P  S+G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+  ++  +E ++ERGI +
Sbjct:  109 RKGVADGKKHLVKVPLTRHNSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALDSLRTHKETAKERGISL 210          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PROMS (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain AS9601) GN=rpsE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 53/102 (51.96%), Postives = 75/102 (73.53%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++N+V VP+T   + P  S G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  + VSRERGI +
Sbjct:  100 RKGVSDGKKNLVRVPLTPNNSIPTLSLGSDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSVSRERGISL 201          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PROMM (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpsE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 50/102 (49.02%), Postives = 77/102 (75.49%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++++V VP+T++ + P  S+G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+  ++  +E ++ERGI +
Sbjct:  103 RKGVADGKKHLVKVPLTRHNSIPTLSNGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALASLRTHKETAKERGISL 204          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PROM3 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpsE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 50/102 (49.02%), Postives = 77/102 (75.49%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++++V VP+T++ + P  S+G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+  ++  +E ++ERGI +
Sbjct:  104 RKGVADGKKHLVKVPLTRHNSIPTLSNGREGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALASLRTHKETAKERGISL 205          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SYNSC (30S ribosomal protein S5 OS=Synechococcus sp. (strain CC9605) GN=rpsE PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.925e-23
Identity = 50/102 (49.02%), Postives = 77/102 (75.49%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++++V VP+T++ + P  S+G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+  ++  +E ++ERGI +
Sbjct:  108 RKGVADGKKHLVKVPLTRHNSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSLLRTHKETAKERGISL 209          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SYNPX (30S ribosomal protein S5 OS=Synechococcus sp. (strain WH8102) GN=rpsE PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.925e-23
Identity = 50/102 (49.02%), Postives = 77/102 (75.49%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++++V VP+T++ + P  S+G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+  ++  +E ++ERGI +
Sbjct:  109 RKGVADGKKHLVKVPLTRHNSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSLLRTHKETAKERGISL 210          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RR5_EMIHU (30S ribosomal protein S5, chloroplastic OS=Emiliania huxleyi GN=rps5 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.515e-23
Identity = 49/89 (55.06%), Postives = 70/89 (78.65%), Query Frame = -1
Query:  231 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 497
            +K   D ++N++TVP+T   + PH+ +G FGAAK++LRP++PG GVIAGGA RIVLE+AG++N L KQLGSN+ LNNARAT+  +  ++
Sbjct:   67 RKGVTDGKKNVITVPLTSSNSIPHKINGRFGAAKLVLRPSAPGCGVIAGGAPRIVLELAGIKNILSKQLGSNSLLNNARATIDGLSNLR 155          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PROM9 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpsE PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 52/102 (50.98%), Postives = 74/102 (72.55%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++N+V VP+T   + P  S G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  +  SRERGI +
Sbjct:  101 RKGVSDGKKNLVRVPLTPNNSIPTLSKGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISL 202          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PROM2 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpsE PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 52/102 (50.98%), Postives = 74/102 (72.55%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++N+V VP+T   + P  S G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  +  SRERGI +
Sbjct:  100 RKGVSDGKKNLVRVPLTPNNSIPTLSKGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISL 201          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR5_THAPS8.643e-2452.0430S ribosomal protein S5, chloroplastic OS=Thalass... [more]
RS5_SYNPW1.129e-2349.0230S ribosomal protein S5 OS=Synechococcus sp. (str... [more]
RS5_PROMS1.474e-2351.9630S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROMM1.474e-2349.0230S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROM31.474e-2349.0230S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_SYNSC1.925e-2349.0230S ribosomal protein S5 OS=Synechococcus sp. (str... [more]
RS5_SYNPX1.925e-2349.0230S ribosomal protein S5 OS=Synechococcus sp. (str... [more]
RR5_EMIHU2.515e-2355.0630S ribosomal protein S5, chloroplastic OS=Emilian... [more]
RS5_PROM93.284e-2350.9830S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROM23.284e-2350.9830S ribosomal protein S5 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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