CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_GLOVI (30S ribosomal protein S5 OS=Gloeobacter violaceus GN=rpsE PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.289e-23
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   DAR+ ++ VP+ K  + PH   G  GAA V L+PAS GTGVIAGGAVR VLE+AG++N L K LGS + LNNARA   A+ +++   EV+ ERG+P+
Sbjct:  116 KKGVSDARKALIRVPLNKINSIPHPMSGSSGAANVFLKPASGGTGVIAGGAVRTVLELAGIKNVLAKSLGSKSPLNNARAAADALSRLRTLSEVAGERGVPV 217          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MICAN (30S ribosomal protein S5 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.602e-23
Identity = 51/100 (51.00%), Postives = 75/100 (75.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K   D ++ ++ V +TK  +  H + G  G A+V++RPA+PGTGVIAGGAVR VLE+AGV+N L KQLGS+N LNNARA V A++ ++ + EV+++RG+
Sbjct:   67 RKGVADGKKQLIEVSLTKASSITHLTRGASGGAQVIMRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSDNPLNNARAAVNALETLRTFSEVAKDRGV 166          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PROMT (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain NATL2A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.555e-23
Identity = 49/102 (48.04%), Postives = 76/102 (74.51%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++++V VP+T+  + P  S+G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  +  ++ERGI +
Sbjct:  102 RKGVADGKKHLVRVPLTRNSSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSELRTHKATAKERGISL 203          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PROM1 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain NATL1A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.555e-23
Identity = 49/102 (48.04%), Postives = 76/102 (74.51%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++++V VP+T+  + P  S+G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  +  ++ERGI +
Sbjct:  102 RKGVADGKKHLVRVPLTRNSSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSELRTHKATAKERGISL 203          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PROMP (30S ribosomal protein S5 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpsE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.248e-22
Identity = 51/102 (50.00%), Postives = 74/102 (72.55%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++++V VP+T   + P  S G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  +  SRERGI +
Sbjct:  100 RKGVSDGKKHLVRVPLTPNNSIPTLSKGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISL 201          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PROMA (30S ribosomal protein S5 OS=Prochlorococcus marinus GN=rpsE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.248e-22
Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++N+V VP+T   + P  S+G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+  ++  +  ++ERGI +
Sbjct:  105 RKGVADGKKNLVRVPLTPNSSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSLLRTHKATAKERGISL 206          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PROM5 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpsE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.248e-22
Identity = 51/102 (50.00%), Postives = 74/102 (72.55%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++++V VP+T   + P  S G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  +  SRERGI +
Sbjct:  100 RKGVSDGKKHLVRVPLTPNNSIPTLSKGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISL 201          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PROM0 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpsE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.630e-22
Identity = 51/102 (50.00%), Postives = 74/102 (72.55%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++N+V VP+T   + P  S G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  +  S+ERGI +
Sbjct:  100 RKGVSDGKKNLVRVPLTPNNSIPTLSLGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASKERGISL 201          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SYNR3 (30S ribosomal protein S5 OS=Synechococcus sp. (strain RCC307) GN=rpsE PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.129e-22
Identity = 49/102 (48.04%), Postives = 76/102 (74.51%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   D ++++V VP+T+  + P  S G  GAA V++RPA+PGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA++ ++  ++ ++ERGI +
Sbjct:  112 KKGVADGKKHLVKVPLTRSNSIPTISTGRDGAASVLMRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALRDLRTHQDTAKERGITL 213          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PELTS (30S ribosomal protein S5 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rpsE PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.129e-22
Identity = 54/102 (52.94%), Postives = 73/102 (71.57%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   DA++N++ VP+    T PH   G+FGA KV+L+PA+PGTGVIAGG VR +LE+AGV + L K LGSNNA N  RAT+ A++ +K   EV+R RG P+
Sbjct:   61 RKGIEDAKKNMIKVPLAG-TTIPHEVIGEFGAGKVLLKPAAPGTGVIAGGPVRAILELAGVRDILTKSLGSNNANNMVRATIEALKSLKTPEEVARLRGKPV 161          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_GLOVI4.289e-2351.9630S ribosomal protein S5 OS=Gloeobacter violaceus ... [more]
RS5_MICAN5.602e-2351.0030S ribosomal protein S5 OS=Microcystis aeruginosa... [more]
RS5_PROMT9.555e-2348.0430S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROM19.555e-2348.0430S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROMP1.248e-2250.0030S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROMA1.248e-2249.0230S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROM51.248e-2250.0030S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROM01.630e-2250.0030S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_SYNR32.129e-2248.0430S ribosomal protein S5 OS=Synechococcus sp. (str... [more]
RS5_PELTS2.129e-2252.9430S ribosomal protein S5 OS=Pelotomaculum thermopr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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