CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RR5_ODOSI (30S ribosomal protein S5, chloroplastic OS=Odontella sinensis GN=rps5 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.631e-22
Identity = 48/100 (48.00%), Postives = 72/100 (72.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+  D R+N++ +P+TK L+ PH   G FGA K+++RP+  G+GVIAGG+VR VLE+AG++N + KQLGSNN LNNARA V  +  +    +V ++R +
Sbjct:   76 KKAKADGRKNLIKIPITKSLSIPHNVIGIFGACKIIMRPSIEGSGVIAGGSVRTVLEVAGIKNVIAKQLGSNNVLNNARAAVSGLNNLTTKSQVLKKRDL 175          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RR5_GUITH (30S ribosomal protein S5, chloroplastic OS=Guillardia theta GN=rps5 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 46/102 (45.10%), Postives = 73/102 (71.57%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K+  D R+N++ +P+T   + PH   G  GAAKV+++P++PG+GVIAGG+VR +LE+AG++N L KQLGS+N LNNARA   A+  ++ +  V  +R + +
Sbjct:   67 KKAVTDGRKNLINIPLTNQNSIPHIVQGYSGAAKVIIKPSAPGSGVIAGGSVRTILELAGIKNILAKQLGSSNPLNNARAAANALINLRTYTSVLNDRNLDL 168          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RR5_GRATL (30S ribosomal protein S5, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rps5 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 61/163 (37.42%), Postives = 90/163 (55.21%), Query Frame = -1
Query:  198 KKEKVKD-----GFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 671
            KK+ +KD      +EE                +L FRAI                       V+K   DA+++I+ VP+TK  + PH  +G  GAAKV+LRP++ G+GVIAGG+ R VLE+AGV+N L KQL S+N LNNARA + A+ +++ ++  ++ R I
Sbjct:    2 KKKSIKDKEQENNWEEKVVQVKRVTKVVKGGKKLSFRAILIVGNEKGEIGVGIGKASDVIGAVKKGVTDAKKHIINVPLTKSYSIPHPIEGISGAAKVILRPSAIGSGVIAGGSTRTVLELAGVKNILAKQLRSSNTLNNARAVLNALSQLRTFQNTAQNRDI 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SYMTH (30S ribosomal protein S5 OS=Symbiobacterium thermophilum GN=rpsE PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.074e-21
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K   DA+++++ +P+    T PH   G FGA KV+L+PASPGTGVIAGGAVR VLE AGV + L K LGSNNA N   AT+  ++++K   EV++ RG P+
Sbjct:   61 RKGTEDAKKHMIKIPLNG-TTIPHEVIGRFGAGKVLLKPASPGTGVIAGGAVRAVLEAAGVRDILTKSLGSNNAANQVLATLAGLRQLKSAEEVAKLRGKPV 161          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THETN (30S ribosomal protein S5 OS=Thermoanaerobacter tengcongensis GN=rpsE PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.602e-20
Identity = 50/102 (49.02%), Postives = 71/102 (69.61%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K+  DA+++++ VP+    T PH   G+FGA KV+L+PA  GTGVIAGG VR VLE AG+ + L K LGS+NA N   AT+  ++++K   EV+R RGIP+
Sbjct:   62 RKAIEDAKKHLIKVPVVG-TTIPHEVIGEFGAGKVLLKPAREGTGVIAGGPVRAVLESAGIRDVLSKSLGSSNATNMVYATIEGLKRLKTAEEVARLRGIPV 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACHD (30S ribosomal protein S5 OS=Bacillus halodurans GN=rpsE PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.602e-20
Identity = 50/99 (50.51%), Postives = 71/99 (71.72%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VP+    T PH   G FGA +V+L+PAS GTGVIAGG VR VL++AGV + L K LGSNN +N  RATV  +Q++K+  +V++ RG
Sbjct:   61 RKAVEDAKKNLIEVPIVG-TTIPHEIVGRFGAGRVLLKPASEGTGVIAGGPVRAVLDLAGVGDILSKSLGSNNPINMVRATVKGLQELKRAEDVAKLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CHLT3 (30S ribosomal protein S5 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rpsE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.439e-20
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = -1
Query:  201 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K   DA++N++ VP+ K  T PH+    FGAAKV+++PA+PGTG+IAGGAVR VLEMAGV++ L K LGS+N  N  +ATV  +Q++    +VS  RG
Sbjct:   67 KGIEDAKKNVIEVPIIKG-TIPHQIFAKFGAAKVLMKPATPGTGLIAGGAVRAVLEMAGVKDVLTKSLGSSNPHNVVKATVHGLQEVSDAYDVSERRG 163          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_HELMI (30S ribosomal protein S5 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 50/99 (50.51%), Postives = 70/99 (70.71%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K   DA++N++ VP+    T PH + G FGA +V+L+PAS GTGVIAGG VR VLE+AG+ + L K LGSNNA N  RAT+  ++ +K+  EV++ RG
Sbjct:   61 RKGVEDAKKNLIVVPVVG-TTIPHPALGVFGAGRVLLKPASKGTGVIAGGPVRAVLELAGIHDILTKSLGSNNANNMVRATMEGLRSLKRAEEVAKLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACSK (30S ribosomal protein S5 OS=Bacillus clausii (strain KSM-K16) GN=rpsE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 48/99 (48.48%), Postives = 69/99 (69.70%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VP+    T PH+  G FGA +V L+PAS GTGVIAGG VR VLE+AG+ + L K LGS+N +N  RAT+  +  +K+  EV++ RG
Sbjct:   61 RKAVEDAKKNLIEVPIVN-TTIPHQIVGRFGAGRVFLKPASEGTGVIAGGPVRAVLELAGIGDVLSKSLGSSNPINMVRATITGLTNLKRAEEVAKLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CARHZ (30S ribosomal protein S5 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rpsE PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K   DA++N++ VP+    T PH   G+ GA KV+L+PA+PGTGVIAG AVR +LEMAGV + L K LGSNN  N A AT+ A++ +K    V++ RG
Sbjct:   61 RKGIEDAKKNLIKVPIVN-TTIPHEIIGEAGAGKVLLKPAAPGTGVIAGSAVRAILEMAGVRDILTKSLGSNNPHNMAHATIEALKSLKTVEMVAKLRG 158          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR5_ODOSI3.631e-2248.0030S ribosomal protein S5, chloroplastic OS=Odontel... [more]
RR5_GUITH1.380e-2145.1030S ribosomal protein S5, chloroplastic OS=Guillar... [more]
RR5_GRATL1.802e-2137.4230S ribosomal protein S5, chloroplastic OS=Gracila... [more]
RS5_SYMTH3.074e-2150.9830S ribosomal protein S5 OS=Symbiobacterium thermo... [more]
RS5_THETN2.602e-2049.0230S ribosomal protein S5 OS=Thermoanaerobacter ten... [more]
RS5_BACHD2.602e-2050.5130S ribosomal protein S5 OS=Bacillus halodurans GN... [more]
RS5_CHLT34.439e-2052.0430S ribosomal protein S5 OS=Chloroherpeton thalass... [more]
RS5_HELMI7.571e-2050.5130S ribosomal protein S5 OS=Heliobacterium modesti... [more]
RS5_BACSK7.571e-2048.4830S ribosomal protein S5 OS=Bacillus clausii (stra... [more]
RS5_CARHZ1.291e-1950.5130S ribosomal protein S5 OS=Carboxydothermus hydro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
back to top