CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ECOLI (30S ribosomal protein S5 OS=Escherichia coli (strain K12) GN=rpsE PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ECOLC (30S ribosomal protein S5 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ECOL6 (30S ribosomal protein S5 OS=Escherichia coli O6 GN=rpsE PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ECOL5 (30S ribosomal protein S5 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ECOK1 (30S ribosomal protein S5 OS=Escherichia coli O1:K1 / APEC GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ECOHS (30S ribosomal protein S5 OS=Escherichia coli O9:H4 (strain HS) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ECO57 (30S ribosomal protein S5 OS=Escherichia coli O157:H7 GN=rpsE PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ECO24 (30S ribosomal protein S5 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CUPTR (30S ribosomal protein S5 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 45/99 (45.45%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+  +ARR +V V + K  T  H   G  GAAKV++ PA  GTGVIAGG +R + E+ GV N + K  GS N  N  RAT+  +QKM    E++ +RG
Sbjct:   67 QKAMDEARRKMVKVSL-KNGTLQHEVVGKHGAAKVLMMPAKEGTGVIAGGPMRAIFEVMGVTNVVTKSHGSTNPYNMVRATLDGLQKMSTPGEIAAKRG 164
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CITK8 (30S ribosomal protein S5 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_ECOLI2.787e-1443.4330S ribosomal protein S5 OS=Escherichia coli (stra... [more]
RS5_ECOLC2.787e-1443.4330S ribosomal protein S5 OS=Escherichia coli (stra... [more]
RS5_ECOL62.787e-1443.4330S ribosomal protein S5 OS=Escherichia coli O6 GN... [more]
RS5_ECOL52.787e-1443.4330S ribosomal protein S5 OS=Escherichia coli O6:K1... [more]
RS5_ECOK12.787e-1443.4330S ribosomal protein S5 OS=Escherichia coli O1:K1... [more]
RS5_ECOHS2.787e-1443.4330S ribosomal protein S5 OS=Escherichia coli O9:H4... [more]
RS5_ECO572.787e-1443.4330S ribosomal protein S5 OS=Escherichia coli O157:... [more]
RS5_ECO242.787e-1443.4330S ribosomal protein S5 OS=Escherichia coli O139:... [more]
RS5_CUPTR2.787e-1445.4530S ribosomal protein S5 OS=Cupriavidus taiwanensi... [more]
RS5_CITK82.787e-1443.4330S ribosomal protein S5 OS=Citrobacter koseri (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
back to top