CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CHRSD (30S ribosomal protein S5 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARRN+V V ++   T  +      GA+KV ++PAS GTG+IAGGA+R VLE+AGV + L K  GS N +N  RAT+  +  M+   +++ +RG+
Sbjct:   61 QKAMDQARRNMVKVSLSG-ATLQYPVKARHGASKVFMQPASEGTGIIAGGAMRSVLELAGVHDVLAKCYGSTNPVNVVRATIKGLASMQSPEDIAAKRGM 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BORAP (30S ribosomal protein S5 OS=Borrelia afzelii (strain PKo) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +KS   AR+N+  V + K  T PH   G F  AKV+++PA+ GTGVIAGG VR V+E  GV + L K LGSNN++N  +AT  A   +    +V+  RG
Sbjct:   60 KKSLTSARKNLRFVSIRKG-TLPHEVIGCFKKAKVLIKPATHGTGVIAGGPVRAVMEALGVHDILSKSLGSNNSMNVVKATFKAFDLVLNAEKVAEMRG 157          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ALCBS (30S ribosomal protein S5 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 45/99 (45.45%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H      GA+KV ++PA  GTGVIAGGA+R VLE+AGV+N L K  GS N +N  RAT   ++ M     V+ +RG
Sbjct:   62 QKALEAARRNMIQVELNG-TTIQHPMKARHGASKVYMQPADEGTGVIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVRATFNGLKSMASPESVAAKRG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACIAD (30S ribosomal protein S5 OS=Acinetobacter sp. (strain ADP1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  198 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            K+   ARRN++TV +    T  H  +   GA++V ++PAS GTGVIAGGA+R VLE AGV N L K  GS NA N   AT   ++ M    +V+ +RG+
Sbjct:   61 KALEAARRNMITVDLAG-TTLQHPVNARHGASRVYMQPASEGTGVIAGGAMRAVLEAAGVHNVLAKCYGSTNAANVVNATFKGLRDMTSPEKVAAKRGL 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SILST (30S ribosomal protein S5 OS=Silicibacter sp. (strain TM1040) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+R ++ VP+ +  T  H   G  GA KV++R A  GTG+IAGG +R V EM G+++ + K +GS N  N  RAT+  ++K +  R V++ RG
Sbjct:   70 RKATEQAKRQMIRVPLKEGRTLHHDMYGRHGAGKVVMRTAPEGTGIIAGGPMRAVFEMLGIKDVVSKSVGSQNPYNMIRATIDGLKKEQSPRSVAQRRG 168          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_POLSQ (30S ribosomal protein S5 OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+  +ARR ++ V + K  T  H   G  GA++V++ PA  GTG+IAGG +R + ++ GV N + K LGS N  N  RAT+  + KM    E++ +RG
Sbjct:   67 QKAMDEARRKMIKVTLRKG-TLQHTVTGQHGASRVLISPAKDGTGIIAGGPMRAIFDVMGVTNVVAKSLGSTNPYNLVRATIDGLSKMSTPAEIAAKRG 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PHOLL (30S ribosomal protein S5 OS=Photorhabdus luminescens subsp. laumondii GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 45/99 (45.45%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+ TV +    T  H   G    ++V ++PA  GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  MK    V+ +RG
Sbjct:   61 QKAMEKARRNMKTVALNSG-TLYHPVKGAHTGSRVFMQPAHEGTGIIAGGAMRAVLEVAGVRNVLAKTYGSTNPINVVRATLDALDSMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LACJO (30S ribosomal protein S5 OS=Lactobacillus johnsonii GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 45/166 (27.11%), Postives = 80/166 (48.19%), Query Frame = -1
Query:  204 AKKTSAFGKTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 701
            A +  +   ++K++ KD  E+                +++F A+                       ++K+    ++ ++ VP T   T PH   G +G+  +ML+PA  G+GV AGGAVRI++++AG+ +   K LGSN  +N  RAT+  + K+K   +V + R
Sbjct:    2 ANRNDSRRDSRKDRKKDDIEDQLVAINRITKVVKGGRRMRFAAVVIVGDRKGHVGFGTGKAQEVPEAIRKAVEAGKKRMIKVP-TVGTTIPHEVMGHYGSGNIMLKPAEAGSGVAAGGAVRIIMDLAGISDVTSKSLGSNTPINVIRATMDGLSKLKTREDVLKLR 166          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LACGA (30S ribosomal protein S5 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 45/166 (27.11%), Postives = 80/166 (48.19%), Query Frame = -1
Query:  204 AKKTSAFGKTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 701
            A +  +   ++K++ KD  E+                +++F A+                       ++K+    ++ ++ VP T   T PH   G +G+  +ML+PA  G+GV AGGAVRI++++AG+ +   K LGSN  +N  RAT+  + K+K   +V + R
Sbjct:    2 ANRNDSRRDSRKDRKKDDIEDQLVAINRITKVVKGGRRMRFAAVVIVGDRKGHVGFGTGKAQEVPEAIRKAVEAGKKRMIKVP-TVGTTIPHEVMGHYGSGNIMLKPAEAGSGVAAGGAVRIIMDLAGISDVTSKSLGSNTPINVIRATMDGLSKLKTREDVLKLR 166          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CHLCV (30S ribosomal protein S5 OS=Chlamydophila caviae GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 36/100 (36.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K    AR+N++T+   +  + PH    D   A+++L+PA  GTG++AG  +R++LEMAGV+N + K LGSNN +N  +A   A+  +   ++V + R +
Sbjct:   63 RKGGEAARKNLITIESLESGSIPHEVLVDQDGAQLLLKPAKSGTGIVAGSRIRLILEMAGVKNIVAKSLGSNNPMNQVKAAFKALLSLSSRKDVLQRRRV 162          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_CHRSD2.787e-1443.0030S ribosomal protein S5 OS=Chromohalobacter salex... [more]
RS5_BORAP2.787e-1445.4530S ribosomal protein S5 OS=Borrelia afzelii (stra... [more]
RS5_ALCBS2.787e-1445.4530S ribosomal protein S5 OS=Alcanivorax borkumensi... [more]
RS5_ACIAD2.787e-1445.4530S ribosomal protein S5 OS=Acinetobacter sp. (str... [more]
RS5_SILST3.639e-1439.3930S ribosomal protein S5 OS=Silicibacter sp. (stra... [more]
RS5_POLSQ3.639e-1440.4030S ribosomal protein S5 OS=Polynucleobacter sp. (... [more]
RS5_PHOLL3.639e-1445.4530S ribosomal protein S5 OS=Photorhabdus luminesce... [more]
RS5_LACJO3.639e-1427.1130S ribosomal protein S5 OS=Lactobacillus johnsoni... [more]
RS5_LACGA3.639e-1427.1130S ribosomal protein S5 OS=Lactobacillus gasseri ... [more]
RS5_CHLCV3.639e-1436.0030S ribosomal protein S5 OS=Chlamydophila caviae G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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