CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACIB3 (30S ribosomal protein S5 OS=Acinetobacter baumannii (strain AB307-0294) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = -1
Query:  201 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K+   ARRN++TV +    T  H  +   GA++V ++PAS GTGVIAGGA+R VLE AGV N L K  GS NA N   AT   ++ M    +V+ +RG
Sbjct:   61 KALEAARRNMITVDLAG-TTLQHPVNARHGASRVYMQPASEGTGVIAGGAMRAVLEAAGVHNVLAKCYGSTNAANVVNATFKGLRDMTSPEKVAAKRG 157          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SYNAS (30S ribosomal protein S5 OS=Syntrophus aciditrophicus (strain SB) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14
Identity = 41/99 (41.41%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K    A++++  + + K  T P+   G FGA +V+L+PAS GTG+IAGGAVR VLE+AG+ N L K LGS+N  N  +AT+  + +++    ++  RG
Sbjct:   61 RKGMEQAKKSMTKIEIEKG-TIPYEVIGKFGAGRVLLKPASEGTGLIAGGAVRAVLEVAGIHNILTKCLGSHNPHNLVKATIEGLCRLESPGRIAASRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SILPO (30S ribosomal protein S5 OS=Silicibacter pomeroyi GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+R ++ V + +  T  H  +G  GA KV++R A  GTG+IAGG +R V EM GV++ + K LGS N  N  RAT+  ++K +  R V++ RG
Sbjct:   71 RKATEQAKRQMIRVQLREGRTLHHDIEGRHGAGKVVMRAAPEGTGIIAGGPMRAVFEMLGVKDVVSKSLGSANPYNMIRATIDGLKKEQSPRSVAQRRG 169          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PSYWF (30S ribosomal protein S5 OS=Psychrobacter sp. (strain PRwf-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   A+RN++TV +    T  H      GA+KV ++PA+ GTGVIAGGAVR VLE AGVEN L K  GS N  N  RAT   ++ M    + + +RG
Sbjct:   60 QKALEAAKRNMITVDLDG-ATLQHPIIARHGASKVYMQPANEGTGVIAGGAVRAVLESAGVENVLTKCYGSTNPTNVVRATFNGLRDMSSPEKAAAKRG 157          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_DICNV (30S ribosomal protein S5 OS=Dichelobacter nodosus (strain VCS1703A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   A++N+VT+ + K  T  H   G  GAA+V ++PAS GTG+IAGGA+R V ++ GV++ L K  G+ N  N  RAT+ A+  M    +V+ +RG
Sbjct:   63 QKAMDQAKKNLVTIALNKD-TLQHAITGHHGAARVFMQPASEGTGIIAGGAMRAVFDVVGVKDVLAKCQGTRNPGNVIRATINALTSMATPEKVAAKRG 160          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_AQUAE (30S ribosomal protein S5 OS=Aquifex aeolicus GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K    A++N++ VP+    T PH   G FGA K+++ PA  GTGV+AGGA + V E+AG  + L K +GS N  N  RA   A+ ++K   +++ ERG+P+
Sbjct:   79 KGIEKAKKNVIRVPIVDG-TVPHDVIGTFGATKIIVLPARRGTGVVAGGAAKPVFELAGYTDVLTKIIGSTNPDNVVRAVFDALLQLKTPEQIAEERGLPV 178          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SINMW (30S ribosomal protein S5 OS=Sinorhizobium medicae (strain WSM419) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R+++ VP+    T  H   G  GA KV+LR A PGTG+IAGG +R V E  GV + + K  GS+N  N  RAT  A++     ++++ +RG+
Sbjct:   72 RKATEAAKRDLIFVPLRGGRTLHHDVHGRHGAGKVLLRSAKPGTGIIAGGPMRAVFETLGVHDVVAKSTGSSNPYNMVRATFDALKNQMHPKDIAAQRGM 171          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RHIME (30S ribosomal protein S5 OS=Rhizobium meliloti GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R+++ VP+    T  H   G  GA KV+LR A PGTG+IAGG +R V E  GV + + K  GS+N  N  RAT  A++     ++++ +RG+
Sbjct:   72 RKATEAAKRDLIFVPLRGGRTLHHDVHGRHGAGKVLLRSAKPGTGIIAGGPMRAVFETLGVHDVVAKSTGSSNPYNMVRATFDALKNQMHPKDIAAQRGM 171          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PSEPF (30S ribosomal protein S5 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARRN++ V +    T  +      GA+KV ++PAS GTG+IAGGA+R VLE+AGV+N L K  GS N +N   AT   ++ M+    ++ +RG+
Sbjct:   62 QKAMEAARRNMIQVDLNG-TTLQYAMKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKAMQSPESIAAKRGL 160          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PSEFS (30S ribosomal protein S5 OS=Pseudomonas fluorescens (strain SBW25) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARRN++ V +    T  +      GA+KV ++PAS GTG+IAGGA+R VLE+AGV+N L K  GS N +N   AT   ++ M+    ++ +RG+
Sbjct:   62 QKAMEAARRNMIQVDLNG-TTLQYAMKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKAMQSPESIAAKRGL 160          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_ACIB34.753e-1445.9230S ribosomal protein S5 OS=Acinetobacter baumanni... [more]
RS5_SYNAS6.208e-1441.4130S ribosomal protein S5 OS=Syntrophus aciditrophi... [more]
RS5_SILPO6.208e-1440.4030S ribosomal protein S5 OS=Silicibacter pomeroyi ... [more]
RS5_PSYWF6.208e-1446.4630S ribosomal protein S5 OS=Psychrobacter sp. (str... [more]
RS5_DICNV6.208e-1442.4230S ribosomal protein S5 OS=Dichelobacter nodosus ... [more]
RS5_AQUAE6.208e-1440.5930S ribosomal protein S5 OS=Aquifex aeolicus GN=rp... [more]
RS5_SINMW8.108e-1439.0030S ribosomal protein S5 OS=Sinorhizobium medicae ... [more]
RS5_RHIME8.108e-1439.0030S ribosomal protein S5 OS=Rhizobium meliloti GN=... [more]
RS5_PSEPF8.108e-1442.0030S ribosomal protein S5 OS=Pseudomonas fluorescen... [more]
RS5_PSEFS8.108e-1442.0030S ribosomal protein S5 OS=Pseudomonas fluorescen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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