CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURCC (30S ribosomal protein S5 OS=Burkholderia cenocepacia (strain MC0-3) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURCA (30S ribosomal protein S5 OS=Burkholderia cenocepacia (strain AU 1054) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURA4 (30S ribosomal protein S5 OS=Burkholderia ambifaria (strain MC40-6) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BRUSU (30S ribosomal protein S5 OS=Brucella suis GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R+++ VP+    T  H  +G  GA KV+LR A  G G+IAGG +R V E  GV++ + K LGS+N  N  RAT  A++     ++++ +RGI
Sbjct:   70 RKATEAAKRDMIFVPLRSGRTLHHDVEGRHGAGKVLLRAAPAGKGIIAGGPMRAVFETLGVQDVVAKSLGSSNPYNMVRATFDALKHQMHPKDIAAQRGI 169
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BRUSI (30S ribosomal protein S5 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R+++ VP+    T  H  +G  GA KV+LR A  G G+IAGG +R V E  GV++ + K LGS+N  N  RAT  A++     ++++ +RGI
Sbjct:   70 RKATEAAKRDMIFVPLRSGRTLHHDVEGRHGAGKVLLRAAPAGKGIIAGGPMRAVFETLGVQDVVAKSLGSSNPYNMVRATFDALKHQMHPKDIAAQRGI 169
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BRUO2 (30S ribosomal protein S5 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R+++ VP+    T  H  +G  GA KV+LR A  G G+IAGG +R V E  GV++ + K LGS+N  N  RAT  A++     ++++ +RGI
Sbjct:   70 RKATEAAKRDMIFVPLRSGRTLHHDVEGRHGAGKVLLRAAPAGKGIIAGGPMRAVFETLGVQDVVAKSLGSSNPYNMVRATFDALKHQMHPKDIAAQRGI 169
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BRUME (30S ribosomal protein S5 OS=Brucella melitensis GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R+++ VP+    T  H  +G  GA KV+LR A  G G+IAGG +R V E  GV++ + K LGS+N  N  RAT  A++     ++++ +RGI
Sbjct:   70 RKATEAAKRDMIFVPLRSGRTLHHDVEGRHGAGKVLLRAAPAGKGIIAGGPMRAVFETLGVQDVVAKSLGSSNPYNMVRATFDALKHQMHPKDIAAQRGI 169
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BRUMB (30S ribosomal protein S5 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R+++ VP+    T  H  +G  GA KV+LR A  G G+IAGG +R V E  GV++ + K LGS+N  N  RAT  A++     ++++ +RGI
Sbjct:   70 RKATEAAKRDMIFVPLRSGRTLHHDVEGRHGAGKVLLRAAPAGKGIIAGGPMRAVFETLGVQDVVAKSLGSSNPYNMVRATFDALKHQMHPKDIAAQRGI 169
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BRUC2 (30S ribosomal protein S5 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R+++ VP+    T  H  +G  GA KV+LR A  G G+IAGG +R V E  GV++ + K LGS+N  N  RAT  A++     ++++ +RGI
Sbjct:   70 RKATEAAKRDMIFVPLRSGRTLHHDVEGRHGAGKVLLRAAPAGKGIIAGGPMRAVFETLGVQDVVAKSLGSSNPYNMVRATFDALKHQMHPKDIAAQRGI 169
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BRUAB (30S ribosomal protein S5 OS=Brucella abortus GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R+++ VP+    T  H  +G  GA KV+LR A  G G+IAGG +R V E  GV++ + K LGS+N  N  RAT  A++     ++++ +RGI
Sbjct:   70 RKATEAAKRDMIFVPLRSGRTLHHDVEGRHGAGKVLLRAAPAGKGIIAGGPMRAVFETLGVQDVVAKSLGSSNPYNMVRATFDALKHQMHPKDIAAQRGI 169
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_BURCC1.383e-1342.4230S ribosomal protein S5 OS=Burkholderia cenocepac... [more]
RS5_BURCA1.383e-1342.4230S ribosomal protein S5 OS=Burkholderia cenocepac... [more]
RS5_BURA41.383e-1342.4230S ribosomal protein S5 OS=Burkholderia ambifaria... [more]
RS5_BRUSU1.383e-1339.0030S ribosomal protein S5 OS=Brucella suis GN=rpsE ... [more]
RS5_BRUSI1.383e-1339.0030S ribosomal protein S5 OS=Brucella suis (strain ... [more]
RS5_BRUO21.383e-1339.0030S ribosomal protein S5 OS=Brucella ovis (strain ... [more]
RS5_BRUME1.383e-1339.0030S ribosomal protein S5 OS=Brucella melitensis GN... [more]
RS5_BRUMB1.383e-1339.0030S ribosomal protein S5 OS=Brucella melitensis bi... [more]
RS5_BRUC21.383e-1339.0030S ribosomal protein S5 OS=Brucella canis (strain... [more]
RS5_BRUAB1.383e-1339.0030S ribosomal protein S5 OS=Brucella abortus GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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