CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACP2 (30S ribosomal protein S5 OS=Bacillus pumilus (strain SAFR-032) GN=rpsE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.409e-19
Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VPM    T PH   G FGA  V+L+PAS GTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  + ++K+  +V++ RG
Sbjct:   61 RKAVEDAKKNLIEVPMVG-TTIPHEIIGRFGAGNVLLKPASEGTGVIAGGPVRAVLELAGLADILSKSLGSNTPINMIRATLQGLSELKRAEDVAKLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACCN (30S ribosomal protein S5 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rpsE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.409e-19
Identity = 48/99 (48.48%), Postives = 69/99 (69.70%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VP+    + PH   G FGA +V L+PA+ GTGVIAGG VR VLE+AGV++ L K LGSN  +N  RATV  + ++K+  EV++ RG
Sbjct:   61 RKAIEDAKKNLIEVPLVG-TSIPHEIIGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGSNTPINMIRATVNGLSELKRAEEVAKLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCS2 (30S ribosomal protein S5 OS=Mycobacterium smegmatis GN=rpsE PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +AR+N   VP+    T  H   G+  A  VMLRPASPGTGVIAGGA R VLE AGV + L K LGS+NA+N   ATV A++ +++  EV+  RG+P+
Sbjct:   87 KGVEEARKNFFRVPLIGS-TITHPVQGEAAAGVVMLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPI 186          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRGG (30S ribosomal protein S5 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rpsE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A++N   VP  +  T PH   G+  A  V+L+PASPGTGVIAGG VR VLE AGV + L K LGS+NA+N   ATV A+Q +++  E++  RG+P+
Sbjct:   85 KGVEEAKKNFFKVPRIQG-TIPHPITGEKAAGVVLLKPASPGTGVIAGGPVRAVLECAGVHDILSKSLGSSNAINIVHATVAALQGLQRPEEIAARRGLPL 184          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RHOSR (30S ribosomal protein S5 OS=Rhodococcus sp. (strain RHA1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            QK   +AR++   VPM    T  H   G+  A  VMLRPASPGTGVIAGGAVR VLE AG+ + L K LGS+NA+N   ATV A++ +++  EV+  RG+ +
Sbjct:   99 QKGVEEARKSFFRVPMIGS-TITHPVQGEAAAGVVMLRPASPGTGVIAGGAVRAVLECAGIHDILSKSLGSDNAINVVHATVAALKGLQRPEEVAARRGLAL 199          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RHOOB (30S ribosomal protein S5 OS=Rhodococcus opacus (strain B4) GN=rpsE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            QK   +AR++   VPM    T  H   G+  A  VMLRPASPGTGVIAGGAVR VLE AG+ + L K LGS+NA+N   ATV A++ +++  EV+  RG+ +
Sbjct:   99 QKGVEEARKSFFRVPMIGS-TITHPVQGEAAAGVVMLRPASPGTGVIAGGAVRAVLECAGIHDILSKSLGSDNAINVVHATVAALKGLQRPEEVAARRGLAL 199          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRSV (30S ribosomal protein S5 OS=Streptococcus sanguinis (strain SK36) GN=rpsE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.428e-18
Identity = 48/100 (48.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+  DA++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEDAKKNLIEVPMVG-TTIPHEVLSEFGGAKVLLKPAVEGSGVAAGGAVRAVIELAGVADVTSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRGC (30S ribosomal protein S5 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpsE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.428e-18
Identity = 48/100 (48.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+  DA++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEDAKKNLIEVPMVG-TTIPHEVLSEFGGAKVLLKPAVEGSGVAAGGAVRAVIELAGVADVTSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RHOE4 (30S ribosomal protein S5 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rpsE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.428e-18
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            QK   +AR++   VPM    T  H   G+  A  VMLRPASPGTGVIAGGAVR VLE AG+ + L K LGS+NA+N   ATV A++ +++  EV+  RG+ +
Sbjct:  103 QKGVEEARKSFFRVPMIAN-TITHPVQGEAAAGIVMLRPASPGTGVIAGGAVRAVLECAGIADILSKSLGSDNAINVVHATVAALKGLQRPEEVAARRGLTL 203          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCGI (30S ribosomal protein S5 OS=Mycobacterium gilvum (strain PYR-GCK) GN=rpsE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.428e-18
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +AR+N   VP+    T  H   G+  A  VMLRPASPGTGVIAGGA R VLE AGV + L K LGS+NA+N   ATV A++ +++  EV+  RG+P+
Sbjct:   95 KGVEEARKNFFRVPLIGG-TVTHPVQGEAAAGVVMLRPASPGTGVIAGGACRAVLECAGVHDVLAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPI 194          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_BACP26.409e-1948.4830S ribosomal protein S5 OS=Bacillus pumilus (stra... [more]
RS5_BACCN6.409e-1948.4830S ribosomal protein S5 OS=Bacillus cereus subsp.... [more]
RS5_MYCS28.371e-1950.5030S ribosomal protein S5 OS=Mycobacterium smegmati... [more]
RS5_STRGG1.093e-1848.5130S ribosomal protein S5 OS=Streptomyces griseus s... [more]
RS5_RHOSR1.093e-1850.0030S ribosomal protein S5 OS=Rhodococcus sp. (strai... [more]
RS5_RHOOB1.093e-1850.0030S ribosomal protein S5 OS=Rhodococcus opacus (st... [more]
RS5_STRSV1.428e-1848.0030S ribosomal protein S5 OS=Streptococcus sanguini... [more]
RS5_STRGC1.428e-1848.0030S ribosomal protein S5 OS=Streptococcus gordonii... [more]
RS5_RHOE41.428e-1850.0030S ribosomal protein S5 OS=Rhodococcus erythropol... [more]
RS5_MYCGI1.428e-1850.5030S ribosomal protein S5 OS=Mycobacterium gilvum (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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