CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LYSSC (30S ribosomal protein S5 OS=Lysinibacillus sphaericus (strain C3-41) GN=rpsE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.428e-18
Identity = 47/99 (47.47%), Postives = 69/99 (69.70%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N+V VP     T PH   G FGA +++++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RATV  + ++K+  +V++ RG
Sbjct:   62 RKAVEDAKKNLVEVPRVGGTT-PHLVLGRFGAGEILIKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATVQGLTELKRVEDVAKLRG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_KINRD (30S ribosomal protein S5 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rpsE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.436e-18
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A++N   VP  +  T PH   G+  A  VMLRPASPGTGVIAGG VR VLE AG+ + L K LGS+NA+N   AT+ A++ +++  +V+  RG+P+
Sbjct:  101 KGVEEAKKNFFRVPRIQG-TIPHPIQGEKAAGVVMLRPASPGTGVIAGGPVRAVLECAGIHDVLSKSLGSDNAINIVHATIEALRGLERPEQVAARRGLPV 200          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_DESHD (30S ribosomal protein S5 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rpsE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.436e-18
Identity = 49/99 (49.49%), Postives = 69/99 (69.70%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K   DA++N+V+VP+    T PH   G++GA  V+L+PA+ GTGVIAGGAVR VLE+AGV + L K LGS N  N   AT+ A++ +K+  +V+R RG
Sbjct:   61 RKGMEDAKKNMVSVPLIG-TTIPHAILGNYGAGSVLLKPAAKGTGVIAGGAVRAVLEVAGVSDILTKSLGSANPHNMVNATMAALKSLKRAEDVARLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PELPD (30S ribosomal protein S5 OS=Pelobacter propionicus (strain DSM 2379) GN=rpsE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.181e-18
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K    A++N++ VP+ +  T P   +G FGA +++++PAS GTGVIAGGA R + E AG+ N L K LGSNN  N  +A    +Q++K   E++  RGI
Sbjct:   61 RKGVEQAKKNLIKVPVNQNQTIPFEIEGKFGAGRLLMKPASAGTGVIAGGAARAIFEAAGINNILSKCLGSNNPHNVVKAAFAGLQRLKSPEELAARRGI 160          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_GEOKA (30S ribosomal protein S5 OS=Geobacillus kaustophilus GN=rpsE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.181e-18
Identity = 45/99 (45.45%), Postives = 68/99 (68.69%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VP+    T PH   G FGA +++L+PAS GTGVIAGG  R VLE+AG+ + L K +GSN  +N  RAT   ++++K+  +V+R RG
Sbjct:   61 RKAIEDAKKNLIEVPIVG-TTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVRATFDGLKQLKRAEDVARLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_DESRM (30S ribosomal protein S5 OS=Desulfotomaculum reducens (strain MI-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.181e-18
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K   DA++N++ VP+    T  H+  G FGA KV+++PA+ GTGVIAGG VR +LE+AGV + L K LG+NNA N   AT+  ++++K   EV+R RG
Sbjct:   61 RKGIEDAKKNMIKVPLNG-TTITHQIQGRFGAGKVLMKPAAKGTGVIAGGPVRAILELAGVRDILTKSLGTNNANNMVNATMEGLKQLKTPEEVARLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CORK4 (30S ribosomal protein S5 OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rpsE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.181e-18
Identity = 51/99 (51.52%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK A +AR+N   VPM    T  H   G+  A  VMLRPA+PGTGVIAGGA R VLE AG+++ L K LGS+NA+N   ATV A++++ +  EV+  RG
Sbjct:   95 QKGAEEARKNFFRVPMIAG-TITHPVQGEAAAGIVMLRPAAPGTGVIAGGATRPVLECAGIQDVLSKSLGSDNAINVVHATVDALKQLVRPEEVAARRG 192          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRR6 (30S ribosomal protein S5 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpsE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.154e-18
Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+  DA++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  E++  RGI
Sbjct:   60 RKAVDDAKKNLIEVPMVG-TTIPHEVLSEFGGAKVLLKPAVEGSGVAAGGAVRAVVELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEIAALRGI 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRPN (30S ribosomal protein S5 OS=Streptococcus pneumoniae GN=rpsE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.154e-18
Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+  DA++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  E++  RGI
Sbjct:   60 RKAVDDAKKNLIEVPMVG-TTIPHEVLSEFGGAKVLLKPAVEGSGVAAGGAVRAVVELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEIAALRGI 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRP2 (30S ribosomal protein S5 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rpsE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.154e-18
Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+  DA++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  E++  RGI
Sbjct:   60 RKAVDDAKKNLIEVPMVG-TTIPHEVLSEFGGAKVLLKPAVEGSGVAAGGAVRAVVELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEIAALRGI 158          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_LYSSC1.428e-1847.4730S ribosomal protein S5 OS=Lysinibacillus sphaeri... [more]
RS5_KINRD2.436e-1847.5230S ribosomal protein S5 OS=Kineococcus radiotoler... [more]
RS5_DESHD2.436e-1849.4930S ribosomal protein S5 OS=Desulfitobacterium haf... [more]
RS5_PELPD3.181e-1843.0030S ribosomal protein S5 OS=Pelobacter propionicus... [more]
RS5_GEOKA3.181e-1845.4530S ribosomal protein S5 OS=Geobacillus kaustophil... [more]
RS5_DESRM3.181e-1847.4730S ribosomal protein S5 OS=Desulfotomaculum reduc... [more]
RS5_CORK43.181e-1851.5230S ribosomal protein S5 OS=Corynebacterium kroppe... [more]
RS5_STRR64.154e-1847.0030S ribosomal protein S5 OS=Streptococcus pneumoni... [more]
RS5_STRPN4.154e-1847.0030S ribosomal protein S5 OS=Streptococcus pneumoni... [more]
RS5_STRP24.154e-1847.0030S ribosomal protein S5 OS=Streptococcus pneumoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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