CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCPA (30S ribosomal protein S5 OS=Mycobacterium paratuberculosis GN=rpsE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.154e-18
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +AR+    VP+ +  T  H   G+  A  V+LRPASPGTGVIAGGA R VLE AGV + L K LGS+NA+N   ATV A++ +++  EV+  RG+P+
Sbjct:   95 KGVEEARKGFFRVPLIRG-TITHPVQGEAAAGVVLLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPI 194          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CHLL2 (30S ribosomal protein S5 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=rpsE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.154e-18
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = -1
Query:  204 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 494
            K   D ++N++ VP+ K  T PH+    +G+AKV+++PA+PGTG+IAGGAVR VLEMAGV + L K LGS+N  N  +A +  +Q M    EV+  R
Sbjct:   67 KGVEDGKKNVIKVPIVKG-TIPHQVIAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGVHDVLTKSLGSSNPHNVVKAAIKGLQSMSDALEVAERR 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CORJK (30S ribosomal protein S5 OS=Corynebacterium jeikeium (strain K411) GN=rpsE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.426e-18
Identity = 50/99 (50.51%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK A +AR+N   VPM    T  H   G+  A  VM++PA+PGTGVIAGGAVR VLE AGV++ L K LGS+NA+N   ATV  ++++ +  EV+  RG
Sbjct:   95 QKGAEEARKNFFRVPMING-TITHPVQGEDAAGIVMMKPAAPGTGVIAGGAVRPVLECAGVQDILSKSLGSDNAINIVHATVAGLKQLVRPEEVAARRG 192          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BEUC1 (30S ribosomal protein S5 OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=rpsE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.426e-18
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A++N   VP  +  T PH   G+  A  V LRPASPGTGVIAGG VR VL+ AG+ + L K LGS+NA+N   ATV A+Q +++   V+  RG+P+
Sbjct:   99 KGVEEAKKNFFRVPRIQG-TIPHSVRGEAAAGVVFLRPASPGTGVIAGGPVRAVLDCAGIHDVLSKSLGSSNAINIVHATVAALQGLEEPAAVAARRGLPL 198          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCA9 (30S ribosomal protein S5 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=rpsE PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.086e-18
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +AR+N   VP+    T  H   G+  A  VMLRPAS GTGVIAGGA R VLE AGV + L K LGS+NA+N   ATV A++++++  EV+  RG+P+
Sbjct:   96 KGVDEARKNFFRVPLIGG-TITHPVQGEDSAGVVMLRPASAGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKQLQRPEEVAARRGLPI 195          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CORDI (30S ribosomal protein S5 OS=Corynebacterium diphtheriae GN=rpsE PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.086e-18
Identity = 50/99 (50.51%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK A +AR+N   VPM    T  H   G+  A  VM+RPA+PGTGVIAGGA R VLE AGV++ L K LGS+NA+N   ATV  ++++ +  EV+  RG
Sbjct:   91 QKGAEEARKNFFRVPMVAG-TITHPVQGEAAAGIVMMRPAAPGTGVIAGGAARPVLECAGVQDILCKSLGSDNAINVVHATVAGLKQLNRPEEVAARRG 188          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CHLPD (30S ribosomal protein S5 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rpsE PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.086e-18
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = -1
Query:  204 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 494
            K   D ++N++ VP+ K  T PH+    +G+AKV+++PA+PGTG+IAGGAVR VLEMAG+ + L K LGS+N  N  +A +  +Q M    EV   R
Sbjct:   67 KGVEDGKKNVIKVPIVKG-TIPHQIIAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGIHDVLTKSLGSSNPHNVVKAAIKGLQSMSDAYEVGERR 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACST (30S ribosomal protein S5 OS=Bacillus stearothermophilus GN=rpsE PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.086e-18
Identity = 44/99 (44.44%), Postives = 68/99 (68.69%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VP+    T PH   G FGA +++L+PAS GTGVIAGG  R VLE+AG+ + L K +GSN  +N  RAT   ++++K+  +V++ RG
Sbjct:   61 RKAIEDAKKNLIEVPIVG-TTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVRATFDGLKQLKRAEDVAKLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RR5_CYAME (30S ribosomal protein S5, chloroplastic OS=Cyanidioschyzon merolae GN=rps5 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.086e-18
Identity = 42/85 (49.41%), Postives = 63/85 (74.12%), Query Frame = -1
Query:  240 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQ 494
            K+ VDA++ ++ + +T   +  H S G F AA V L+PA+ G+GVIAGGAVR V+E+AG++N L KQLG +N LNNA+A ++A++
Sbjct:   62 KAVVDAKKQLINITLTPTNSIVHASQGRFSAAVVFLKPAASGSGVIAGGAVRSVMELAGIQNVLSKQLGGSNPLNNAKAALLALK 146          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THETH (30S ribosomal protein S5 OS=Thermus thermophilus GN=rpsE PE=1 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 47/98 (47.96%), Postives = 69/98 (70.41%), Query Frame = -1
Query:  204 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 497
            QK+   ARRN+V VP+    T PH  + +FGA+K++L+PA+PGTGVIAG   R +LE+AGV + L K+LGS N +N A AT+ A+++++   +V R R
Sbjct:   56 QKAGYYARRNMVEVPLQNG-TIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLR 152          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_MYCPA4.154e-1848.5130S ribosomal protein S5 OS=Mycobacterium paratube... [more]
RS5_CHLL24.154e-1847.4230S ribosomal protein S5 OS=Chlorobium limicola (s... [more]
RS5_CORJK5.426e-1850.5130S ribosomal protein S5 OS=Corynebacterium jeikei... [more]
RS5_BEUC15.426e-1847.5230S ribosomal protein S5 OS=Beutenbergia cavernae ... [more]
RS5_MYCA97.086e-1849.5030S ribosomal protein S5 OS=Mycobacterium abscessu... [more]
RS5_CORDI7.086e-1850.5130S ribosomal protein S5 OS=Corynebacterium diphth... [more]
RS5_CHLPD7.086e-1846.3930S ribosomal protein S5 OS=Chlorobium phaeobacter... [more]
RS5_BACST7.086e-1844.4430S ribosomal protein S5 OS=Bacillus stearothermop... [more]
RR5_CYAME7.086e-1849.4130S ribosomal protein S5, chloroplastic OS=Cyanidi... [more]
RS5_THETH9.255e-1847.9630S ribosomal protein S5 OS=Thermus thermophilus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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