CV886674

Overview
NameCV886674
Unique NameCV886674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV886674_ssr39 microsatellite CV886674_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6266 contig Csv1_Contig6266:57..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_THEON (50S ribosomal protein L4P OS=Thermococcus onnurineus (strain NA1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.026e-33
Identity = 91/262 (34.73%), Postives = 128/262 (48.85%), Query Frame = 3
Query:   60 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYG 845
            V V +LEG+   +    + LP+V     RPD++         +  QP      AG +   E+ G G  ++R+ R+           AF    RGGR   P K+ +     IN  ++R              LV ARGH ++ VP++PLVV +  E V KT+   ++ K++G + D E+AK +  IR GKGKMR RRY   KGPL+V  A+   +V+  RN PG              APG H GR  +WTK A E+L EIYG
Sbjct:    3 VKVFNLEGEPVEE----IELPNVFATPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHIVDNVPQVPLVVVNDLEKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGKMRGRRYKKAKGPLIVV-AKNEGIVQGARNHPGVDVVTVENLGVELLAPGTHPGRLTIWTKGAIERLREIYG 255          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_METMJ (50S ribosomal protein L4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.026e-33
Identity = 86/257 (33.46%), Postives = 130/257 (50.58%), Query Frame = 3
Query:   66 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDE 836
            V++L G++A +    + LP++ +   RPD++      +     QP+  +  AG +TSAESWG+GR  +++PR+  G      + A      GGR   P K+ +   ++IN  +KR            P LV  RGH  E   ++PLV  D  E V +T   +  L  +G YAD E+AK S+ +R G+G MR RRY  RK  L+V    G + ++A RN+ G              APG   GR  +WT+SA  +L+E
Sbjct:    5 VRTLTGEIAHE----IDLPEIFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAESWGSGRGAAQVPRLKNGS-----RVARVPQATGGRAAHPPKVEKILVKEINRKEKRKALRSAVAASTYPDLVRERGHLFEG--DLPLVFEDRFEEVTRTGDVIAALTALGVYADVERAKGSRKVRAGRGTMRGRRYKQRKSVLIV---TGGEPLRAARNLAGVDAVAVDQLNAELLAPGTQAGRLTIWTESAIRRLEE 247          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.026e-33
Identity = 88/254 (34.65%), Postives = 122/254 (48.03%), Query Frame = 3
Query:   84 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIY 842
            D++ ++   + LP+V     RPD++     +   N  QPY     AG QTSA SWG+GR V+++PR+  G    R  Q        GGR   P K       KIN  +KR              LV ARGHK     E+P V  D+ E + K    +  L+  G Y D  +AK+ + IR GKGK R R+Y +RK  L+V + E + L KA  N+PG              APG H GR  VWT+SA   ++ ++
Sbjct:    8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVKIKEVISFLQAAGLYDDIIRAKEGKHIRAGKGKRRGRKYKNRKSVLIV-TGEESLLSKAANNLPGVDVATVTALNAELLAPGTHAGRLTVWTQSAITNMEGMF 252          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_THESM (50S ribosomal protein L4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.741e-33
Identity = 88/262 (33.59%), Postives = 127/262 (48.47%), Query Frame = 3
Query:   60 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYG 845
            V V SL G+   +    + LP V +   RPD++         +  QP      AG +   E+ G GR ++R+ R+           AF    RGGR   P K+ +     IN  +K+              LV ARGH I+ +P++PLVV +  E V +T+   ++ K++G + D E+AK +  +R GKGKMR RRY   KGPL+V  A+   +++  RN PG              APG H GR  +WTK A E+L E YG
Sbjct:    3 VKVFSLNGEPIEE----ITLPKVFQTPFRPDLIKRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGRGMARVERIKTSPRF----AAFVPFARGGRRAHPPKVEKVIWEGINKKEKKLALMSAIAATANYDLVRARGHVIDNIPQVPLVVENELEKVYRTAQTREIFKKLGIWEDIERAKRNTKVRAGKGKMRGRRYKKAKGPLIVV-AKNEGIIQGARNHPGVDVVVVDNLGVELLAPGAHPGRLTIWTKGAIERLREFYG 255          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_METAC (50S ribosomal protein L4P OS=Methanosarcina acetivorans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.805e-33
Identity = 86/250 (34.40%), Postives = 122/250 (48.80%), Query Frame = 3
Query:   84 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLD 833
            D+   A   V LP V  A  RPD++         N  QPY     +G +TSA  WG+GR VS +PR+       + + A     +GGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  +  ES+E+T   ++ L+  G Y D  +AK  + IR G+GK+R R+Y  +K  L+V + E   ++KA RN+ G              APG H GR  VWT+SA  KL+
Sbjct:    8 DLTGKAVGEVELPAVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSARGWGSGRGVSHVPRLVN-----SSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATTDPTLVSLRGHIFEA--ELPIVAVNDLESLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV-AGENTPILKAARNLSGVDVVTVDSLNAELLAPGTHAGRLTVWTESAIGKLE 249          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_METMA (50S ribosomal protein L4P OS=Methanosarcina mazei GN=rpl4p PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.502e-32
Identity = 85/250 (34.00%), Postives = 123/250 (49.20%), Query Frame = 3
Query:   84 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLD 833
            D+       + LP V  A  RPD++         N  QPY  S  AG +TSA  WG+GR VS +PR+       + + A     +GGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  +  E++E+T   ++ L+  G Y D  +AK  + IR G+GK+R R+Y  +K  L+V + E + ++KA RN+ G              APG H GR  VWT+SA  KL+
Sbjct:    8 DLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRLKN-----SSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEA--ELPIVAVNDLENLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV-AGENSPILKAARNLSGVDVVTVDSLNAELLAPGTHAGRLTVWTESAIGKLE 249          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_SULAC (50S ribosomal protein L4P OS=Sulfolobus acidocaldarius GN=rpl4p PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.346e-32
Identity = 84/257 (32.68%), Postives = 130/257 (50.58%), Query Frame = 3
Query:   60 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKL 830
            V+V  L+G+   +    + LP      +R D++  V  +    S QP      AG +TSA S+G    ++R+PRV G     +G+ A      GGR+  P    +R   ++N+ +K+            P+ V ARGH+  T   +P+++ D  E++ K    + +LK IG   D ++ K+S+G+R GKGKMR RRY   KGPL+V S   + +V++  NIPG              APGGH GR  ++TKS+   L
Sbjct:   10 VSVLDLKGNQLEE----IELPLFFSYPVRKDLIRRVFLSEFTKSLQPKGRDPLAGKRTSALSFGINLGIARVPRVKG-----SGEAALAPNTVGGRLAFPPTTEKRLVEEVNLKEKKLGIISALAATADPNFVKARGHRF-TSNNVPIILVDDFENISKAKEIMDILKSIGVVDDIKRVKESKGVRAGKGKMRGRRYQIAKGPLIVVSNHKSPVVESASNIPGVNVVSANLVSVIHLAPGGHPGRLTIYTKSSINIL 256          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_PYRKO (50S ribosomal protein L4P OS=Pyrococcus kodakaraensis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.346e-32
Identity = 89/262 (33.97%), Postives = 127/262 (48.47%), Query Frame = 3
Query:   60 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYG 845
            V V +LEG+   +    + LP V     RPD++         +  QP     +AG +   E+ G G  ++R+ R+           AF     GGR   P K+ +     IN  ++R              LV ARGH ++ V ++PLVV+D  + V KT+   ++ K++G + D E+AK +  IR GKGKMR RRY   KGPL+V  A+   +V+  RN PG              APG H GR  +WTK A E+L EIYG
Sbjct:    3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPQAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFAVGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHVVDNVVQIPLVVTDDLQKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGKMRGRRYKKAKGPLIVV-AKNEGIVQGARNHPGVDVVTVDNLGVEYLAPGTHPGRLTIWTKGAIERLREIYG 255          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_PYRFU (50S ribosomal protein L4P OS=Pyrococcus furiosus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.346e-32
Identity = 85/245 (34.69%), Postives = 119/245 (48.57%), Query Frame = 3
Query:  111 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYG 845
            + LP V     RPD++         +  QP      AG +   E+ G G +++R+ R+     +     AF    RGGR   P K+ +     IN  +KR              LV ARGH I+ VP++PL+V D  + V+KT    ++ K++G + D  +AK+  G+R GKGKMR RRY   KGPL+V   +   +V   RN PG              APG H GR  VWT SA E+L E+YG
Sbjct:   16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQKVQKTRETREIFKKLGIWDDIVRAKEKSGVRAGKGKMRGRRYKKAKGPLIVV-GKNEGIVLGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLRELYG 255          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_PYRAB (50S ribosomal protein L4P OS=Pyrococcus abyssi GN=rpl4p PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.346e-32
Identity = 86/245 (35.10%), Postives = 118/245 (48.16%), Query Frame = 3
Query:  111 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYG 845
            + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+     +     AF    RGGR   P K+ +     IN  ++R              +V ARGH I+ VP++PL+V D  + V KT    ++ K++G + D E+AK+  GIR GKGKMR RRY   KGPL+V   +   +V   RN PG              APG H GR  VWT SA E+L EIYG
Sbjct:   16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRYKKAKGPLIVV-GKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLKEIYG 255          
The following BLAST results are available for this feature:
BLAST of CV886674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_THEON3.026e-3334.7350S ribosomal protein L4P OS=Thermococcus onnurine... [more]
RL4_METMJ3.026e-3333.4650S ribosomal protein L4P OS=Methanoculleus marisn... [more]
RL4_METBU3.026e-3334.6550S ribosomal protein L4P OS=Methanococcoides burt... [more]
RL4_THESM6.741e-3333.5950S ribosomal protein L4P OS=Thermococcus sibiricu... [more]
RL4_METAC8.805e-3334.4050S ribosomal protein L4P OS=Methanosarcina acetiv... [more]
RL4_METMA1.502e-3234.0050S ribosomal protein L4P OS=Methanosarcina mazei ... [more]
RL4_SULAC3.346e-3232.6850S ribosomal protein L4P OS=Sulfolobus acidocalda... [more]
RL4_PYRKO3.346e-3233.9750S ribosomal protein L4P OS=Pyrococcus kodakaraen... [more]
RL4_PYRFU3.346e-3234.6950S ribosomal protein L4P OS=Pyrococcus furiosus G... [more]
RL4_PYRAB3.346e-3235.1050S ribosomal protein L4P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_024E07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_024_T3_E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886674 ID=CV886674; Name=CV886674; organism=Citrus sinensis; type=EST; length=884bp
CCCCAACAGAAAAAAACACACACAAACCAAAACCAATGGCCGCCGCCGCC
CGTCCTCTTGTAACCGTCCAGTCTTTGGAAGGTGACATGGCCACCGACGC
AAGCTCCACCGTCCCCTTGCCCGATGTCATGAAGGCCTCTATCCGACCCG
ACATCGTGGGCTTCGTTCACTCTAACATCTCCAAGAACAGCCGCCAGCCT
TACGCCGTTTCCAAGAAGGCAGGGCACCAGACCTCCGCCGAATCATGGGG
TACCGGTCGCGCCGTCTCCCGTATCCCCCGAGTTCCCGGAGGCGGTACCC
ACCGCGCCGGCCAGGGAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATG
TTCGCTCCCACAAAGATCTGGCGCCGATGGCACCGTAAGATCAACGTCAA
TCAGAAGCGATATGCCATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCT
CACTTGTGATGGCCCGTGGTCACAAGATCGAGACTGTTCCGGAAATGCCC
CTGGTCGTCAGTGATTCCGCCGAGAGTGTTGAGAAAACATCAGCTGCTCT
TAAAGTTCTGAAGCAGATCGGTGCATATGCTGACGCCGAGAAGGCGAAGG
ACAGCCAGGGGATTCGCCCTGGAAAGGGTAAAATGAGAAATAGACGTTAC
ATTTCTCGCAAGGGCCCGCTTGTTGTGTACTCAGCCGAGGGTGCTAAGCT
TGTCAAGGCTTTTAGGAACATTCCCGGTGTTGAGGTTGTGAATGTTGAGA
GATTGAACTTGTTGAAGCTGGCGCCGGGTGGCCATCTTGGGCGGTTTATT
GTTTGGACTAAATCGGCTTTTGAGAAGCTTGATGAGATTTATGGTAAGTT
TGATAAGGGTTCCGAGAAGAAGAAGGGTTATGTG
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