CV886674

Overview
NameCV886674
Unique NameCV886674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV886674_ssr39 microsatellite CV886674_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6266 contig Csv1_Contig6266:57..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_METMP (50S ribosomal protein L4P OS=Methanococcus maripaludis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.453e-32
Identity = 91/258 (35.27%), Postives = 126/258 (48.84%), Query Frame = 3
Query:   60 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLD 833
            V V +L+G    D    + LP V +A  RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   ES+ KT   L+V K +   AD E+AKD   IR G+GK+R R+YI  K  LVV   +  + + A RN+ G              APG   GR  +WT++A EK++
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFKTLKLDADLERAKDGVKIRAGRGKLRGRKYIKPKSVLVVV-GDACEAITASRNLAGVDVITANDLSAIHIAPGTMAGRLTLWTENAIEKIN 249          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_PYRHO (50S ribosomal protein L4P OS=Pyrococcus horikoshii GN=rpl4p PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.735e-32
Identity = 83/245 (33.88%), Postives = 118/245 (48.16%), Query Frame = 3
Query:  111 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYG 845
            + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+     +     AF    RGGR   P K+ +     IN  ++R              +V +RGH ++ VP++PL+V D  + V KT    ++ K++G + D E+AK+  G+R GKGKMR RRY   KGPL+V   +   +V   RN PG              APG H GR  VWT SA E+L EIYG
Sbjct:   16 IELPRVFLTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKSRGHIVDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWEDIERAKEKSGVRAGKGKMRGRRYKKAKGPLIVV-GKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLREIYG 255          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_SULSO (50S ribosomal protein L4P OS=Sulfolobus solfataricus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.836e-30
Identity = 80/246 (32.52%), Postives = 121/246 (49.19%), Query Frame = 3
Query:  111 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGK 848
            V LP +    +R D++  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   + NV +KR             + V ARGH  +     P+VV+D   +++ TS   + LK+IG Y D E+ K+   IR GKGKMR R+Y    GPL++     + ++KA RN+ G              APG H GR  ++T+S+ + LDE   K
Sbjct:   23 VELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPGAHPGRLTIYTESSIKILDERLSK 263          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_HALLT (50S ribosomal protein L4P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.090e-30
Identity = 88/256 (34.38%), Postives = 127/256 (49.61%), Query Frame = 3
Query:   63 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKL 830
            TV  L+G    DA S V LP + + + RPD++G   S    N +Q Y   + AG +T AES+G+GR ++ IPR       R    A       GR   P K  +   + +N  +++               V  RGH  +   ++PLVVSD  E + KT  AL VL+ +GA AD E+A++ + +R G+GK R R+Y   K  LVV S E +   +A RN+ G              APG H GR  +WT+SA E++
Sbjct:    4 TVHDLDGG---DAGS-VELPAIFETAFRPDLIGRAVSAAQANRKQAYGADEFAGLRTPAESFGSGRGLAHIPR--SENVARRVPNAVS-----GRAAHPPKAEKDQTKSLNDKERQLAIRSAIAATADAETVAERGHAFDEDLDLPLVVSDEFEDLNKTQEALGVLEAVGADADIERAEEGRSVRAGRGKTRGRKYSQPKSVLVVTSEEPS---RAARNLSGVDVATAREVNAEDLAPGAHPGRLTLWTESAIEEV 245          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_THEAC (50S ribosomal protein L4P OS=Thermoplasma acidophilum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.342e-30
Identity = 81/260 (31.15%), Postives = 126/260 (48.46%), Query Frame = 3
Query:   60 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEI 839
            V + S+ G+M  +    + LP+V    +R DI+      IS + RQPY  S  AG +    +   G  +SR+PR+ GG        A G     G+     +  +  + KIN  +++               V  RGH+ +   ++P+VV D  E + KT  A+ +LK +G Y D E++++ + IR G+GKMR RRY   K  L+V  A  +  +KAFR++PG              APGG  GR  ++T+ A E L E+
Sbjct:    5 VPIYSVSGEMKGE----IDLPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHTTRPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRTTKNLYVKINDRERKMAKYSAIALTASVEAVKKRGHRFKEGLKLPIVVEDGVEGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIV--ARNSSAMKAFRSLPGVDIASPNSLSIRKLAPGGVGGRLTIFTEGAIESLKEV 253          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_META3 (50S ribosomal protein L4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.342e-30
Identity = 82/240 (34.17%), Postives = 116/240 (48.33%), Query Frame = 3
Query:  117 LPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDE 836
            L  V +   RPD++     +      QP  V   AG +TSA+S G G   +R+ R   G       GAF     GGR   P K+ +  H ++N  ++               +V  RGH +ETVP +PL+VSD  ES++KT   L+  K +G   D ++AKD   IR G GK+R R+Y   K  LVV S      VKA +N+PG              APG   GR  +WT+SA E++++
Sbjct:   18 LSAVFETEYRPDLIKRAFLSSFTARLQPKGVDLMAGKRTSAKSIGKGHGRARVQRTGQGA------GAFVPQAVGGRRCHPPKVEKILHERVNKKERLKALASAIAASANIEMVKNRGHVVETVPSVPLIVSDDFESLKKTKEVLETFKNLGLDGDVQRAKDGIKIRSGIGKLRGRKYRKPKSVLVVVSG-ACDAVKASKNLPGVDVISANDLGVMHIAPGADSGRLTLWTESAVEEINK 250          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_METM5 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.651e-29
Identity = 86/258 (33.33%), Postives = 121/258 (46.90%), Query Frame = 3
Query:   60 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLD 833
            V V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   E + KT   L V K +   AD EKAKD   I+ G+ K+R R+Y   +  LVV   +  + + A RN+ G              APG   GR  +WT++A EK++
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINKKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNAEFEGLVKTKEVLDVFKALNLAADVEKAKDGIKIKAGRAKLRGRKYKKPRSVLVVV-GDACEAIAASRNLAGVDVITANDLSAIHIAPGTMAGRLTLWTENAIEKIN 249          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_HALWD (50S ribosomal protein L4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.462e-29
Identity = 83/256 (32.42%), Postives = 124/256 (48.44%), Query Frame = 3
Query:   63 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKL 830
            T+ +L GD A     T+ LP V +   RPD++         N +QPY     AG +T AES+G+GR ++ +PR   G   R  Q         GR   P K  +   + +N  +++            PS V  RGH+ E   E+PLVVSD  E + KT   + VL+ +G +AD  ++ +++ IR G+GK R R+Y   K  L + S E +   KA RN+ G              APG   GR  V+T+SA +++
Sbjct:    4 TIHNLNGDKA----DTLELPAVFETPYRPDVIERAVVAAQANRKQPYGADPYAGMRTPAESFGSGRGMAHVPR-ENGQARRVPQAV------SGRKAHPPKAEKDQSKSVNTKERKLAFQSAVAATADPSQVEERGHQFENDVELPLVVSDEFEELIKTQEVVDVLESLGVHADIVRSDENKSIRAGRGKTRGRKYRRPKSILFITSDEPS---KAARNLAGADVVTAANVSAEDLAPGTQPGRLTVYTESAIKEV 245          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_METM7 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.713e-29
Identity = 86/258 (33.33%), Postives = 122/258 (47.29%), Query Frame = 3
Query:   60 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLD 833
            V V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   ES+ KT   L+V K +   AD  +AKD   I+ G+ K+R R+Y   K  LVV   +  + + A RN+ G              APG   GR  +WT++A EK++
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNADFESLAKTKEVLEVFKTLKLDADLARAKDGIKIKAGRAKLRGRKYKKPKSVLVVV-GDACEAIAASRNLAGVDVITANDLSAIHIAPGTMAGRLTLWTENAIEKIN 249          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_METHJ (50S ribosomal protein L4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.713e-29
Identity = 85/257 (33.07%), Postives = 126/257 (49.03%), Query Frame = 3
Query:   66 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSR--QPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKL 830
            V +L G +A +    + LP V  +  RPD++    + I++ SR  QP+     AG   SA  WG+GR VS +PR+       + + A     +GGR   P K+ +   R IN  +KR            P LV +RGH       +P V+S   ES++KT   +  L+ +G Y D E+A+ S+ +R G+GK+R RRY  RK  L+V    G + ++A RN+ G              APG H  R  +WT+ A  KL
Sbjct:    5 VLTLTGSVAHE----IELPPVFSSEFRPDLIK--KAVIAQQSRRYQPHGAYVYAGITASAVGWGSGRGVSHVPRLKN-----SSRAAKVPQAKGGREAHPPKVEKVLIRNINQKEKRKALNSAIAATISPELVRSRGHVF--TGSLPYVLSGDFESLKKTKEVIAALRAVGVYGDVERAERSRKVRAGRGKLRGRRYKQRKSLLIV---TGKERLRAARNLAGVDVCLVDNLNVELLAPGTHSARLTLWTEDAVRKL 245          
The following BLAST results are available for this feature:
BLAST of CV886674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_METMP7.453e-3235.2750S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_PYRHO9.735e-3233.8850S ribosomal protein L4P OS=Pyrococcus horikoshii... [more]
RL4_SULSO1.836e-3032.5250S ribosomal protein L4P OS=Sulfolobus solfataric... [more]
RL4_HALLT4.090e-3034.3850S ribosomal protein L4P OS=Halorubrum lacusprofu... [more]
RL4_THEAC5.342e-3031.1550S ribosomal protein L4P OS=Thermoplasma acidophi... [more]
RL4_META35.342e-3034.1750S ribosomal protein L4P OS=Methanococcus aeolicu... [more]
RL4_METM52.651e-2933.3350S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_HALWD3.462e-2932.4250S ribosomal protein L4P OS=Haloquadratum walsbyi... [more]
RL4_METM77.713e-2933.3350S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METHJ7.713e-2933.0750S ribosomal protein L4P OS=Methanospirillum hung... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_024E07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_024_T3_E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886674 ID=CV886674; Name=CV886674; organism=Citrus sinensis; type=EST; length=884bp
CCCCAACAGAAAAAAACACACACAAACCAAAACCAATGGCCGCCGCCGCC
CGTCCTCTTGTAACCGTCCAGTCTTTGGAAGGTGACATGGCCACCGACGC
AAGCTCCACCGTCCCCTTGCCCGATGTCATGAAGGCCTCTATCCGACCCG
ACATCGTGGGCTTCGTTCACTCTAACATCTCCAAGAACAGCCGCCAGCCT
TACGCCGTTTCCAAGAAGGCAGGGCACCAGACCTCCGCCGAATCATGGGG
TACCGGTCGCGCCGTCTCCCGTATCCCCCGAGTTCCCGGAGGCGGTACCC
ACCGCGCCGGCCAGGGAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATG
TTCGCTCCCACAAAGATCTGGCGCCGATGGCACCGTAAGATCAACGTCAA
TCAGAAGCGATATGCCATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCT
CACTTGTGATGGCCCGTGGTCACAAGATCGAGACTGTTCCGGAAATGCCC
CTGGTCGTCAGTGATTCCGCCGAGAGTGTTGAGAAAACATCAGCTGCTCT
TAAAGTTCTGAAGCAGATCGGTGCATATGCTGACGCCGAGAAGGCGAAGG
ACAGCCAGGGGATTCGCCCTGGAAAGGGTAAAATGAGAAATAGACGTTAC
ATTTCTCGCAAGGGCCCGCTTGTTGTGTACTCAGCCGAGGGTGCTAAGCT
TGTCAAGGCTTTTAGGAACATTCCCGGTGTTGAGGTTGTGAATGTTGAGA
GATTGAACTTGTTGAAGCTGGCGCCGGGTGGCCATCTTGGGCGGTTTATT
GTTTGGACTAAATCGGCTTTTGAGAAGCTTGATGAGATTTATGGTAAGTT
TGATAAGGGTTCCGAGAAGAAGAAGGGTTATGTG
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