CV886674
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_SULIY (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.007e-28 Identity = 82/264 (31.06%), Postives = 125/264 (47.35%), Query Frame = 3 Query: 57 LVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGK 848 LV S+ D + V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ + +VKA RNI G APG H GR ++T+++ + LDE K Sbjct: 5 LVKKNSVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKESIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAHSGRLTIYTETSIKILDERLSK 263
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_SULIN (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl4p PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.007e-28 Identity = 82/264 (31.06%), Postives = 125/264 (47.35%), Query Frame = 3 Query: 57 LVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGK 848 LV S+ D + V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ + +VKA RNI G APG H GR ++T+++ + LDE K Sbjct: 5 LVKKNSVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKESIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAHSGRLTIYTETSIKILDERLSK 263
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_METM6 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl4p PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.007e-28 Identity = 88/258 (34.11%), Postives = 120/258 (46.51%), Query Frame = 3 Query: 60 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLD 833 V V +L+G D + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN ++ P +V ARGHKIE VP +PLVV+ ES+ KT L V + AD E+AKD I+ G+ K+R R+Y K LVV + V A RN+ G APG GR +WT+SA EKL+ Sbjct: 3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLAKTKEVLGVFTALKLDADLERAKDGVKIKAGRAKLRGRKYKKPKSVLVVV-GDACDAVAASRNLAGVDVITANDLSAIHIAPGTMAGRLTLWTESAIEKLN 249
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_SULIM (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.718e-28 Identity = 82/264 (31.06%), Postives = 125/264 (47.35%), Query Frame = 3 Query: 57 LVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGK 848 LV S+ D + V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ + +VKA RNI G APG H GR ++T+++ + LDE K Sbjct: 5 LVKKNSVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAHPGRLTIYTETSIKILDERLSK 263
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_SULIK (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl4p PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.718e-28 Identity = 82/264 (31.06%), Postives = 125/264 (47.35%), Query Frame = 3 Query: 57 LVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGK 848 LV S+ D + V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ + +VKA RNI G APG H GR ++T+++ + LDE K Sbjct: 5 LVKKNSVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAHPGRLTIYTETSIKILDERLSK 263
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_SULIA (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl4p PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.718e-28 Identity = 82/264 (31.06%), Postives = 125/264 (47.35%), Query Frame = 3 Query: 57 LVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGK 848 LV S+ D + V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ + +VKA RNI G APG H GR ++T+++ + LDE K Sbjct: 5 LVKKNSVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAHPGRLTIYTETSIKILDERLSK 263
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_METB6 (50S ribosomal protein L4P OS=Methanoregula boonei (strain 6A8) GN=rpl4p PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.718e-28 Identity = 80/256 (31.25%), Postives = 123/256 (48.05%), Query Frame = 3 Query: 66 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLD 833 V+++EG +A D + LP + RPD++ + RQP+ AG +SA WG+GR S +PR+ G + A +GGR P + ++IN +K+ L+ +RGH+ E +PL+ D E++ KT + L IG Y+D E++K+S+ +R G+GK+R RRY RK L+V S +A RN+ G APG GR VWT+SA +L+ Sbjct: 5 VKTIEGGVAKD----IELPAMFSEEYRPDLIRKAVLALQSTRRQPHGSYPYAGICSSAVGWGSGRGASHVPRLKNGS-----RAAKVPQAKGGREAHPPVTAKVLIKEINAKEKQKAFRSAVAASIRADLISSRGHRFEGT--VPLIFEDKFENLAKTQEVISALTNIGVYSDIERSKESRKVRAGRGKLRGRRYKQRKSLLIVTSGPE---FRAARNLAGVDVVTVDQLNVEHLAPGMQAGRLTVWTESAVIRLE 246
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_METTP (50S ribosomal protein L4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl4p PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 2.244e-28 Identity = 81/251 (32.27%), Postives = 118/251 (47.01%), Query Frame = 3 Query: 84 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDE 836 D++ + + LP + RPD++ N QPY AG TSA SWG G VSR+PR+ G + A M RGGR P + KIN ++ P +V ARGH E+P+VV ES+ KTS + L G + D +AK+ + +R GKGK+R RR+ + L+V +A+ + +A RN+PG APG H GR VW++ + + L+E Sbjct: 7 DISGNPVGEIVLPAIFDEEYRPDLIKRAVLAAQANRLQPYGPHFYAGMNTSARSWGPGHGVSRVPRIVTGR-----RAAAVPMARGGRASHPPVPSKVLSEKINEKERIKAIRSAVAATAKPDIVAARGHLFSG--ELPIVVRGEIESISKTSELRRFLMAAGLWDDVMRAKNGRKVRAGKGKIRGRRFRQPRSILIVAAADNG-IGRAARNLPGVDFVTADRLNAELLAPGTHAGRLTVWSEPSLKVLEE 249
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_METVS (50S ribosomal protein L4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl4p PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.931e-28 Identity = 86/259 (33.20%), Postives = 119/259 (45.95%), Query Frame = 3 Query: 60 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDE 836 V V +L+G + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN ++ +V ARGHKIE VP +PLVV+ ES+ KT L V K + AD E+AKD I+ G+ K+R R+Y + LVV + V A RN+ G APG GR +WT++A EKL E Sbjct: 3 VKVYNLDGS----EKGAIELPSVFETEYRPDVIKRAVISSLTARLQPKGSDPLAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANSEIVAARGHKIEGVPSLPLVVNAEFESLVKTKEVLSVFKALKLEADLERAKDGIKIKAGRAKLRGRKYKKPRSVLVVV-GDACDAVAASRNLAGVDVITANDLSAIHIAPGTMAGRLTLWTENAIEKLKE 250
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_SULIL (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 5.000e-28 Identity = 82/264 (31.06%), Postives = 124/264 (46.97%), Query Frame = 3 Query: 57 LVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGK 848 LV S+ D + V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ + N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ + +VKA RNI G APG H GR ++T+++ + LDE K Sbjct: 5 LVKKNSVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEANDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKESIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGTHSGRLTIYTETSIKILDERLSK 263 The following BLAST results are available for this feature:
BLAST of CV886674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CV886674 ID=CV886674; Name=CV886674; organism=Citrus sinensis; type=EST; length=884bpback to top |