CV886674

Overview
NameCV886674
Unique NameCV886674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV886674_ssr39 microsatellite CV886674_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6266 contig Csv1_Contig6266:57..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_HALSA (50S ribosomal protein L4P OS=Halobacterium salinarium GN=rpl4p PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.530e-28
Identity = 83/257 (32.30%), Postives = 122/257 (47.47%), Query Frame = 3
Query:   60 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKL 830
            VTV+ L+GD A     T+ LP V +  +RPD+V         N  Q Y   + AG +T+AES G+GR ++ +P+  G       QGA      GGR   P K  +     +N  +++              LV  RGH  +   E PLVVSD  E + KT   + +L+ +G +AD E+A + + +R G+G +R R+Y      L V ++E      A RN+ G              APG   GR  VWT+SA E++
Sbjct:    3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKANG-------QGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKYQEPTSILFVTASESGPSTAA-RNLAGVDVATGREVNAEDLAPGAEPGRLTVWTESAVEEV 247          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_HALS3 (50S ribosomal protein L4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.530e-28
Identity = 83/257 (32.30%), Postives = 122/257 (47.47%), Query Frame = 3
Query:   60 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKL 830
            VTV+ L+GD A     T+ LP V +  +RPD+V         N  Q Y   + AG +T+AES G+GR ++ +P+  G       QGA      GGR   P K  +     +N  +++              LV  RGH  +   E PLVVSD  E + KT   + +L+ +G +AD E+A + + +R G+G +R R+Y      L V ++E      A RN+ G              APG   GR  VWT+SA E++
Sbjct:    3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKANG-------QGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKYQEPTSILFVTASESGPSTAA-RNLAGVDVATGREVNAEDLAPGAEPGRLTVWTESAVEEV 247          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_SULTO (50S ribosomal protein L4P OS=Sulfolobus tokodaii GN=rpl4p PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.114e-27
Identity = 77/249 (30.92%), Postives = 116/249 (46.59%), Query Frame = 3
Query:   84 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKL 830
            D+  +    + LP      +R D++  V  +    + QP      AG +TSA S+G    ++R+PRV        G+ A      GGR+  P  + ++   ++N  +K+             + V  RGH + ++  +P++V D    + KT   ++VL+ +  Y D E+ KD   IR GKGKMR RRY   KGPL V        VKA  NIPG              APGGH GR  ++TKS+ + L
Sbjct:   14 DLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARVPRVK-----TTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGH-VFSIDTLPIIVVDDITKLTKTKEIIEVLESLKVYEDVERVKDRIRIRSGKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNIPGVDVILASDLSVIHLAPGGHPGRLTIYTKSSIDVL 256          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_METJA (50S ribosomal protein L4P OS=Methanocaldococcus jannaschii GN=rpl4p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.232e-27
Identity = 81/247 (32.79%), Postives = 114/247 (46.15%), Query Frame = 3
Query:   96 DASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDE 836
            +A   + LP V +   RPD++     +      QP      AG +TSA++ G G   +R+ RVP G   R  Q        GGR   P K+ +    ++N  ++             P LV  RGH  ET   +P++V  S E ++KT     V +++G   D  +AK+   IR GKGKMR R+Y   +  LVV   +    + A RN+PG              APGG  GR  VWT+SA EKL E
Sbjct:   11 EAVKEIDLPAVFEEEYRPDLIKRAFLSAFTARLQPKGSDPLAGLRTSAKNIGKGHGRARVDRVPQGWAARVPQAV------GGRRAHPPKVEKILWERVNKKERIKAIKSAIAATANPELVKERGHVFET-ENLPIIVESSFEELQKTKDVFAVFEKLGISDDVIRAKNGIKIRAGKGKMRGRKYKKPRSILVVV-GDKCNAILASRNLPGVDVITAKDLGIIHLAPGGVAGRLTVWTESALEKLKE 249          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_THEVO (50S ribosomal protein L4P OS=Thermoplasma volcanium GN=rpl4p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.219e-27
Identity = 79/259 (30.50%), Postives = 124/259 (47.88%), Query Frame = 3
Query:   60 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDE 836
            V + S+ G+   +    + LP++   S+R D++      IS + RQPY  S  AG +    +   G  +SR+PR+ GG        A G     G+     +  ++ +  IN  +++               V  RGH+      +P+VV D+   ++KT  A+ +LK IG Y D  ++K+ + IR G+GKMRNRRY   K  L+V     +  +K F+++PG              APGG  GR  V+T+SA EKL E
Sbjct:    5 VPIYSINGEKRGE----IDLPEIFNYSVREDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHTTKPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRSTKKLYVGINEKERKMAKFSAIAMTASADAVRKRGHRFSESLPLPVVVEDAVSGIKKTKDAVNLLKSIGLYEDILRSKEGKHIRAGRGKMRNRRYKVPKSLLIV--GTDSVSLKVFKSLPGVDVASMDSLSIRKLAPGGVGGRLTVYTESAIEKLRE 252          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_NATPD (50S ribosomal protein L4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.825e-25
Identity = 81/258 (31.40%), Postives = 118/258 (45.74%), Query Frame = 3
Query:   63 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDE 836
            TV+ L+GD A +    V LP V +   RPD++         N  Q     + AG +T AES G+GR ++ +PR   G      Q         GR   P K  +     IN  +++               V  RGH+ +   ++PLVVSD  E + KT  A+ VL+ +G Y D E+A+D + +R G+G  R R+Y   K  LVV S + +    A RN+ G              APG   GR  +WT+SA  ++ E
Sbjct:    4 TVRDLDGDDAGE----VELPAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAESPGSGRGMAHVPR-QNGRAREVPQAV------SGRPAHPPKAEKDRGLDINTKERKLATRSAIAATANADRVEERGHEFDEETDLPLVVSDEFEDLVKTQEAVDVLEALGVYDDIERAEDGKTVRAGRGTTRGRKYTEPKSVLVVTSDDQS---LAARNLAGSDVATADEVNVEDLAPGTQAGRLTLWTESALAEVAE 247          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_AERPE (50S ribosomal protein L4P OS=Aeropyrum pernix GN=rpl4p PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 5.720e-24
Identity = 74/242 (30.58%), Postives = 109/242 (45.04%), Query Frame = 3
Query:  108 TVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSA-ESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKL 830
            +V LP + +  +R D++     +      QP      AG +TSA S G GR V+R+PR+ G     + + A  NM RGGR   P ++ +     IN  +KR              LV  RGH+  +   +P+V+  S    +     A  +L+ +G Y D  +AK+ +    GKGKMR RRY   K  L V     + L  A + +PG              APGGH GR  ++T  A + L
Sbjct:   28 SVVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLGVGRGVARVPRIKG-----SLRAALVNMARGGRAAHPPRVEKVLKEYINKKEKRLATISAISATSREDLVRQRGHRF-SAETLPIVLDSSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFVLEDPRSPLALAVKGMPGVDVVTPTLLSVLHLAPGGHPGRLTIYTTEALKLL 263          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_NANEQ (50S ribosomal protein L4P OS=Nanoarchaeum equitans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22
Identity = 82/252 (32.54%), Postives = 113/252 (44.84%), Query Frame = 3
Query:  111 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSA------ESWGT--GRAVSRIPRVPGGGTHRAGQGAFGNMCRG--GRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDE 836
            + LP      IR D++      I  + RQPY  S  AG Q SA       SW T  GR +SR+ R               N+ +   G+   P K  + W+ KIN  ++R              LV ARGH I+    +P+VV D  E + KT    ++L ++G   + E+  + +  R GKGK R R YI RKGPL+V +    +L KA  NIPG              APG   GR ++ +K A E L E
Sbjct:   16 IELPPQFNEKIRFDVIKRAFLAIQSHKRQPYGASPIAGKQHSAWTSKRRRSWRTSYGRGISRVSRAILRRHGALFYWVARNIAQAVKGKKAHPPKAEKDWYEKINKKERRLAIRSALAATKELDLVKARGHIIDK--PVPIVV-DGLEQLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVNDYNEQLFKAVDNIPGLDIEEVPNLNVELLAPGAKPGRLLIISKDALETLRE 263          
BLAST of CV886674 vs. ExPASy Swiss-Prot
Match: RL4_HALMA (50S ribosomal protein L4P OS=Haloarcula marismortui GN=rpl4p PE=1 SV=4)

HSP 1 Score: 99.3673 bits (246), Expect = 2.938e-20
Identity = 78/258 (30.23%), Postives = 119/258 (46.12%), Query Frame = 3
Query:   63 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDE 836
            T+  L+G+  TD    V LPDV +  +R D++G        N +Q Y   + AG +T AES+G+GR  + +P+   G   R  Q         GR   P K  +     +N  +++              LV  RGH+ +   E+P+VVSD  E + KT   + +L+ +  +AD ++A D   I+ G+G  R R+Y      L V S E +    A RN+ G              APGG  GR  V+T+SA  ++ E
Sbjct:    4 TIYDLDGN--TDGE--VDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK-QDGRARRVPQAV------KGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDR-DEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRA-DETKIKAGQGSARGRKYRRPASILFVTSDEPS---TAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEVAE 245          
The following BLAST results are available for this feature:
BLAST of CV886674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_HALSA6.530e-2832.3050S ribosomal protein L4P OS=Halobacterium salinar... [more]
RL4_HALS36.530e-2832.3050S ribosomal protein L4P OS=Halobacterium salinar... [more]
RL4_SULTO1.114e-2730.9250S ribosomal protein L4P OS=Sulfolobus tokodaii G... [more]
RL4_METJA4.232e-2732.7950S ribosomal protein L4P OS=Methanocaldococcus ja... [more]
RL4_THEVO7.219e-2730.5050S ribosomal protein L4P OS=Thermoplasma volcaniu... [more]
RL4_NATPD8.825e-2531.4050S ribosomal protein L4P OS=Natronomonas pharaoni... [more]
RL4_AERPE5.720e-2430.5850S ribosomal protein L4P OS=Aeropyrum pernix GN=r... [more]
RL4_NANEQ2.403e-2232.5450S ribosomal protein L4P OS=Nanoarchaeum equitans... [more]
RL4_HALMA2.938e-2030.2350S ribosomal protein L4P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_024E07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_024_T3_E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886674 ID=CV886674; Name=CV886674; organism=Citrus sinensis; type=EST; length=884bp
CCCCAACAGAAAAAAACACACACAAACCAAAACCAATGGCCGCCGCCGCC
CGTCCTCTTGTAACCGTCCAGTCTTTGGAAGGTGACATGGCCACCGACGC
AAGCTCCACCGTCCCCTTGCCCGATGTCATGAAGGCCTCTATCCGACCCG
ACATCGTGGGCTTCGTTCACTCTAACATCTCCAAGAACAGCCGCCAGCCT
TACGCCGTTTCCAAGAAGGCAGGGCACCAGACCTCCGCCGAATCATGGGG
TACCGGTCGCGCCGTCTCCCGTATCCCCCGAGTTCCCGGAGGCGGTACCC
ACCGCGCCGGCCAGGGAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATG
TTCGCTCCCACAAAGATCTGGCGCCGATGGCACCGTAAGATCAACGTCAA
TCAGAAGCGATATGCCATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCT
CACTTGTGATGGCCCGTGGTCACAAGATCGAGACTGTTCCGGAAATGCCC
CTGGTCGTCAGTGATTCCGCCGAGAGTGTTGAGAAAACATCAGCTGCTCT
TAAAGTTCTGAAGCAGATCGGTGCATATGCTGACGCCGAGAAGGCGAAGG
ACAGCCAGGGGATTCGCCCTGGAAAGGGTAAAATGAGAAATAGACGTTAC
ATTTCTCGCAAGGGCCCGCTTGTTGTGTACTCAGCCGAGGGTGCTAAGCT
TGTCAAGGCTTTTAGGAACATTCCCGGTGTTGAGGTTGTGAATGTTGAGA
GATTGAACTTGTTGAAGCTGGCGCCGGGTGGCCATCTTGGGCGGTTTATT
GTTTGGACTAAATCGGCTTTTGAGAAGCTTGATGAGATTTATGGTAAGTT
TGATAAGGGTTCCGAGAAGAAGAAGGGTTATGTG
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