EY665590

Overview
NameEY665590
Unique NameEY665590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.103e-26
Identity = 74/171 (43.27%), Postives = 97/171 (56.73%), Query Frame = 2
Query:  146 GAATSDPNTSFFGTT*KKATSKIPPSNGPSASFN---ITAEDYDN-HQTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVKESSHLWEYRGDKRPRKIITTLAWF*PRMAFNP 646
            GA  S P T+F G   KK  +     +G S++ N   + A++ D   QT  DRW G AYD SDDQQDITR KG VDSLF  P    TH AV+ SY+Y+S+GLRTY+ ++T+   YIA A MD LV  I+KNFM    +K    L  + G  + +     L +   +M  NP
Sbjct:   10 GAPASTP-TNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF--AKMGINP 177          
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.320e-25
Identity = 71/161 (44.10%), Postives = 90/161 (55.90%), Query Frame = 2
Query:  275 QTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVKESSHLWEYRGDKRPRKIITTLAWF*PRMAFNPNYYEMPVKWERGKGSKTPFN*IRQKFPGGKIGTNLGK 757
            QT  DRW G AYD SDDQQDITR KG VDSLF  PM   TH A++ SY+YIS+GLR Y+ ++T+D LYIA A MD L+  +AKNFM    +K    L  + G  + +     L +   +M  NP    M    E   G+  P   IRQ++       N GK
Sbjct:   53 QTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF--AKMGINP---IMMSAGELESGNGEPAKLIRQRYREAADIINKGK 208          
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 1.064e-23
Identity = 67/143 (46.85%), Postives = 84/143 (58.74%), Query Frame = 2
Query:  146 GAATSDPN-TSFFGTT*KKA-TSKIPPSNGPSASFN-----ITAEDYDN-HQTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVK 550
            GA  S P  +SF G    K   S     +G S+S N     + A++ D   QT  DRW G AYD SDDQQDITR KG VD+LF  PM   TH AV+ SYDYIS+G ++YN ++ +D  YIA   MD LV  ++KNFM    +K
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIK 152          
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.390e-23
Identity = 62/138 (44.93%), Postives = 82/138 (59.42%), Query Frame = 2
Query:  146 GAATSDPNTSFFGTT*KKATSKIPPSNGPSAS---FNITAEDYDNHQTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVK 550
            GA  S P T+F G   KK  +     +G S+    F + A +  + +   D+W G AYD SDDQQDITR KG VDSLF  P    TH AV+ SY+Y+S+GLR Y+ ++T+   YIA A MD LV  ++KNFM    +K
Sbjct:   10 GAPASTP-TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIK 146          
BLAST of EY665590 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.438e-20
Identity = 56/138 (40.58%), Postives = 78/138 (56.52%), Query Frame = 2
Query:  137 HGSGAATSDPNTSFFGTT*KKATSKIPPSNGPSASFNITAEDYDNHQTKHDRWNGHAYDESDDQQDITRRKGAVDSLFLPPMRTATHYAVMRSYDYISRGLRTYNLNDTIDRLYIATAIMDYLVDPIAKNFMPAAQVK 550
            +GS A  S P + F G++ KK T+   PS+  + S  + A +  N +   D+W   A D SDDQ DI R KG VDSLF  P    TH  +  S++Y S+GLR Y++++ +   YIA A MD LV  I KNF+    +K
Sbjct:   19 NGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAAE--NEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIK 154          
The following BLAST results are available for this feature:
BLAST of EY665590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA_ORYSJ5.103e-2643.27Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU4.320e-2544.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.064e-2346.85Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.390e-2344.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.438e-2040.58Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-C11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665590 ID=EY665590; Name=EY665590; organism=Citrus sinensis; type=EST; length=790bp
CGGACGCGTGGGCACGCACTCTGTGCATTGATTCGCTTTCCATTGCCTGC
ATTACAGCGTGACCCATTAACTACTTCAATCACAGCCGCCCAATTCTCGC
TAGCCTAATGGCTGCTGCTGAACCGTTGAACTATCACATGGCTCTGGCGC
TGCAACCTCTGACCCAAACACATCTTTCTTTGGCACCACCTAGAAGAAGG
CAACCTCAAAGATCCCCCCATCCAACGGCCCTTCTGCCAGCTTCAACATT
ACTGCTGAAGACTATGACAACCATCAGACCAAGCACGACAGATGGAACGG
CCATGCCTACGACGAATCTGATGACCAACAAGACATCACCAGACGAAAAG
GAGCTGTGGACTCTCTGTTCCTACCCCCCATGAGAACCGCAACTCACTAT
GCTGTCATGAGATCGTATGACTACATCAGCCGAGGTCTCCGCACATACAA
CTTGAACGACACGATCGACCGTCTCTACATTGCCACTGCTATCATGGACT
ATCTTGTTGATCCCATCGCCAAGAACTTCATGCCCGCTGCCCAAGTCAAG
GAGTCCTCTCATCTTTGGGAATATCGGGGAGACAAACGACCAAGGAAAAT
CATCACCACGCTAGCTTGGTTTTGACCCAGAATGGCCTTCAACCCCAATT
ATTATGAAATGCCGGTAAAATGGGAAAGGGGAAAAGGCTCAAAAACCCCG
TTTAATTAAATCAGGCAAAAGTTCCCGGGGGGGAAAATTGGAACTAATCT
GGGAAAGGGAAAAAATGGGCTGGCCTTCGGGAAAAAATAA
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