EL492437

Overview
NameEL492437
Unique NameEL492437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length428
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:599..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL1_PEA (Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 3.833e-58
Identity = 104/138 (75.36%), Postives = 121/138 (87.68%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPI 424
            YI DPCSATYPLMQKLRQVLV+HAL NGE+EK  N+SIFQKIA FE+ELKT+LPKEVE+ R   E+G+PT+PN+I  CRSYPLYR VR+ELG+  LTGEKV SPGEE DK+FTA+CQGKIIDP+L+CL +WNGAPLPI
Sbjct:  585 YIDDPCSATYPLMQKLRQVLVDHALVNGESEKNLNTSIFQKIATFEDELKTLLPKEVESTRAAYESGNPTVPNKINGCRSYPLYRFVRQELGTGLLTGEKVISPGEECDKLFTAICQGKIIDPLLQCLGDWNGAPLPI 722          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL1_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=PAL PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 5.006e-58
Identity = 105/139 (75.54%), Postives = 117/139 (84.17%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y  DPCSA YPLMQKLRQ LV+HAL NGENEK   +SIF K+AAFE+ELK VLPKEVE AR  VE+G+P IPNRIKECRSYPLY+ VRE LG+  LTGEKV SPGEE DKVFTAMC+G IIDP+LECL+ W+GAPLPIC
Sbjct:  569 YADDPCSANYPLMQKLRQALVDHALQNGENEKNTGTSIFLKVAAFEDELKAVLPKEVEAARIAVESGNPAIPNRIKECRSYPLYKFVREGLGTELLTGEKVRSPGEECDKVFTAMCEGSIIDPLLECLKSWDGAPLPIC 707          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL2_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 8.539e-58
Identity = 104/139 (74.82%), Postives = 117/139 (84.17%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y  DPCSA YPL QKLRQVLV+HAL NGE+EK  ++SIFQKIAAFE+ELK VLPKEVE AR  +ENG+P IPNRI ECRSYPLY+ VREELG+  LTGEKV SPGE  DKVFTA+C G IIDP+LECL+ W+GAPLPIC
Sbjct:  570 YADDPCSANYPLFQKLRQVLVDHALQNGEHEKNVSTSIFQKIAAFEDELKAVLPKEVEGARSAIENGNPAIPNRITECRSYPLYKFVREELGTEMLTGEKVKSPGEVCDKVFTAVCDGGIIDPLLECLKSWDGAPLPIC 708          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL2_CICAR (Phenylalanine ammonia-lyase 2 OS=Cicer arietinum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.456e-57
Identity = 101/139 (72.66%), Postives = 119/139 (85.61%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DPCSATYPLMQKLR VLV+HAL NG+ E  +++SIFQKI AFE+ELKT+LPKEVE+ R  VENG+P +PNRI ECRSYPLY+ VRE LG++ LTGEK+ SPGEE DKVF A+C G+ IDPML+CL+EWNGAPLPIC
Sbjct:  580 YIDDPCSATYPLMQKLRHVLVDHALENGDREGNSSTSIFQKIGAFEQELKTLLPKEVESVRVDVENGNPAVPNRIIECRSYPLYKFVRENLGTSLLTGEKIRSPGEECDKVFAALCDGRFIDPMLDCLKEWNGAPLPIC 718          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PALY_BROFI (Phenylalanine ammonia-lyase OS=Bromheadia finlaysoniana GN=PAL PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 4.238e-57
Identity = 104/139 (74.82%), Postives = 118/139 (84.89%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y  DPCS+TYPLMQKLR V+VEHALNNG  EK +N+SIFQKI++FE ELK  LPKEVE AR   ENGSP I NRIK+CRSYPLY+ V+ E+GS FLTGEKV SPGEEFDKVF A+C+GK IDPML+CL+EWNGAPLPIC
Sbjct:  566 YADDPCSSTYPLMQKLRAVIVEHALNNGVKEKDSNTSIFQKISSFENELKAALPKEVEAARAEFENGSPAIENRIKDCRSYPLYKFVK-EVGSGFLTGEKVVSPGEEFDKVFNAICEGKAIDPMLDCLKEWNGAPLPIC 703          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL1_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.610e-56
Identity = 103/139 (74.10%), Postives = 116/139 (83.45%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y  DPCS+ YPLMQKLRQVLV+ A+ NGE+EK  NSSIFQKI AFE+EL  VLPKEVE+ R   E+G+P I NRI ECRSYPLYRLVREELG+  LTGEKV SPGEE DKVFTA+C G+IIDP+LECL+ WNGAPLPIC
Sbjct:  566 YADDPCSSNYPLMQKLRQVLVDQAMKNGESEKNVNSSIFQKIGAFEDELIAVLPKEVESVRAVFESGNPLIRNRITECRSYPLYRLVREELGTELLTGEKVRSPGEEIDKVFTAICNGQIIDPLLECLKSWNGAPLPIC 704          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL2_LITER (Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.747e-56
Identity = 100/139 (71.94%), Postives = 116/139 (83.45%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y  DPCSATYPLMQKLR+VLV HAL N  NEK A++SIF KI  FEEELK +LPKEVENAR +VENG+P IPN+I+ECRSYPLY+ VR ELG+  LTGEKV SPGEE D+VF A+C+GK++DP+L CL  WNGAPLPIC
Sbjct:  567 YADDPCSATYPLMQKLREVLVSHALANSGNEKDASTSIFHKIGVFEEELKGILPKEVENARASVENGTPAIPNKIEECRSYPLYKFVRGELGTELLTGEKVRSPGEELDQVFNALCEGKLVDPLLACLEAWNGAPLPIC 705          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL4_POPKI (Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 6.119e-56
Identity = 103/139 (74.10%), Postives = 119/139 (85.61%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DPCSATYPLMQKLRQVLV+HAL NGE E+ +++SIFQKI AFEEELK +LPKEVE+AR  +ENG+P IPNRI + RSYPLY+ VREELG+  LTGEKV SPGEEFDKVFTA+C GK+IDP    L+EWNGAPLP+C
Sbjct:  433 YIDDPCSATYPLMQKLRQVLVDHALMNGEKEQNSSTSIFQKIGAFEEELKILLPKEVESARLELENGNPAIPNRITDRRSYPLYKFVREELGTVLLTGEKVGSPGEEFDKVFTAICAGKLIDPCWSVLKEWNGAPLPLC 571          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PALY_WHEAT (Phenylalanine ammonia-lyase OS=Triticum aestivum GN=PAL PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.320e-50
Identity = 95/139 (68.35%), Postives = 108/139 (77.70%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y  DPCSA YPLMQK+R VLVEHAL NGE E    +S+F K+A FE+EL+ VLPKEVE AR  VENG+    NRI ECRSYPLYR VR+ELG+ +LTGEK  SPGEE DKVF AM QGK ID +LECL+EWNG PLP+C
Sbjct:  562 YADDPCSANYPLMQKMRAVLVEHALANGEAEAHVETSVFAKLAMFEQELRAVLPKEVEAARSAVENGTAAQQNRIAECRSYPLYRFVRKELGTEYLTGEKTRSPGEEVDKVFVAMNQGKHIDALLECLKEWNGEPLPLC 700          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL4_ARATH (Phenylalanine ammonia-lyase 4 OS=Arabidopsis thaliana GN=PAL4 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.245e-49
Identity = 91/139 (65.47%), Postives = 106/139 (76.26%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y  DPCS TYPLMQKLR +LV+HAL + E E  + +S+F KI AFE ELK +LPKEVE  R   E G+  I NRIKECRSYPLYR VR+EL +  LTGE V SPGEEFDKVF A+  GK+IDP+LECL+EWNGAP+ IC
Sbjct:  569 YADDPCSLTYPLMQKLRHILVDHALADPEREANSATSVFHKIGAFEAELKLLLPKEVERVRVEYEEGTSAIANRIKECRSYPLYRFVRDELNTELLTGENVRSPGEEFDKVFLAISDGKLIDPLLECLKEWNGAPVSIC 707          
The following BLAST results are available for this feature:
BLAST of EL492437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PAL1_PEA3.833e-5875.36Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=... [more]
PAL1_IPOBA5.006e-5875.54Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=... [more]
PAL2_IPOBA8.539e-5874.82Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=... [more]
PAL2_CICAR1.456e-5772.66Phenylalanine ammonia-lyase 2 OS=Cicer arietinum G... [more]
PALY_BROFI4.238e-5774.82Phenylalanine ammonia-lyase OS=Bromheadia finlayso... [more]
PAL1_SOLLC1.610e-5674.10Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PAL2_LITER2.747e-5671.94Phenylalanine ammonia-lyase 2 OS=Lithospermum eryt... [more]
PAL4_POPKI6.119e-5674.10Phenylalanine ammonia-lyase G4 (Fragment) OS=Popul... [more]
PALY_WHEAT1.320e-5068.35Phenylalanine ammonia-lyase OS=Triticum aestivum G... [more]
PAL4_ARATH7.245e-4965.47Phenylalanine ammonia-lyase 4 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC0350 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0350, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492437 ID=EL492437; Name=EL492437; organism=Citrus sinensis; type=EST; length=428bp
ACGTCTTTGCTACATTGTTGACCCCTGCAGTGCTACCTATCCATTGATGC
AAAAGCTAAGGCAAGTACTTGTTGAGCACGCACTGAACAATGGAGAGAAC
GAGAAGACTGCCAACTCTTCAATCTTCCAGAAGATTGCAGCCTTTGAGGA
GGAATTGAAAACCGTTTTGCCCAAAGAAGTTGAGAACGCCAGGCAGACTG
TTGAGAATGGAAGTCCAACAATTCCCAACAGGATCAAAGAATGCAGGTCT
TACCCTTTGTACAGGTTAGTGAGGGAGGAGCTCGGGTCTAATTTTCTAAC
AGGGGAAAAAGTTACATCGCCCGGCGAGGAATTTGACAAAGTGTTTACAG
CAATGTGCCAGGGCAAGATCATTGATCCAATGCTGGAATGTCTCAGGGAA
TGGAATGGCGCCCCTCTTCCAATTTGTT
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