EL492435

Overview
NameEL492435
Unique NameEL492435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPK (Tryptophan synthase beta chain OS=Pseudomonas putida (strain KT2440) GN=trpB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.600e-19
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF ++IGKETR Q  EK G  PD L+ACVGGGSNAMGLFHEF+ + S
Sbjct:  198 TVAGPHPYPAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPS 257          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPG (Tryptophan synthase beta chain OS=Pseudomonas putida (strain GB-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.600e-19
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF ++IGKETR Q  EK G  PD L+ACVGGGSNAMGLFHEF+ + S
Sbjct:  198 TVAGPHPYPAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPS 257          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PSEP1 (Tryptophan synthase beta chain OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=trpB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.600e-19
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF ++IGKETR Q  EK G  PD L+ACVGGGSNAMGLFHEF+ + S
Sbjct:  198 TVAGPHPYPAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPS 257          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_GLOVI (Tryptophan synthase beta chain OS=Gloeobacter violaceus GN=trpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.396e-19
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQ 187
            S AGPHPYP+MVR+F AVIG+ETR Q LE+ G  PDVLIACVGGGSNA+GLFH+F+ +
Sbjct:  208 SAAGPHPYPLMVREFQAVIGRETRVQCLERLGRLPDVLIACVGGGSNAIGLFHDFLDE 265          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_AZOVD (Tryptophan synthase beta chain OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=trpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.396e-19
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQ 187
            +VAGPHPYP MVRDF AVIGKETR Q +EK G  PD L+AC+GGGSNAMGLFH F+ +
Sbjct:  198 TVAGPHPYPAMVRDFQAVIGKETREQLIEKEGRLPDSLVACIGGGSNAMGLFHPFLDE 255          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PSEU2 (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. syringae (strain B728a) GN=trpB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.435e-19
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF A+IGKET+ Q LEK G  PD L+ACVGGGSNAMGLFH F+   S
Sbjct:  198 TVAGPHPYPAMVRDFQAIIGKETKEQMLEKEGRLPDSLVACVGGGSNAMGLFHPFLDDAS 257          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB1_ARCFU (Tryptophan synthase beta chain 1 OS=Archaeoglobus fulgidus GN=trpB1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.435e-19
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQD 190
            SV GPHP+P +VRDF AVIGKE RRQ +E  GG PD +IACVGGGSNAMG+FH F+  D
Sbjct:  197 SVVGPHPFPTIVRDFQAVIGKEARRQIIEAEGGMPDAIIACVGGGSNAMGIFHPFLNDD 255          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PSEE4 (Tryptophan synthase beta chain OS=Pseudomonas entomophila (strain L48) GN=trpB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.880e-19
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF ++IGKETR Q  EK G  PD LIACVGGGSNAMGLFH+F+   S
Sbjct:  198 TVAGPHPYPAMVRDFQSIIGKETRAQLQEKEGRLPDSLIACVGGGSNAMGLFHDFLDDAS 257          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PSEAE (Tryptophan synthase beta chain OS=Pseudomonas aeruginosa GN=trpB PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.880e-19
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYP MVRDF AVIGKETR Q  EK G  PD L+AC+GGGSNAMGLFH F+
Sbjct:  196 TVAGPHPYPAMVRDFQAVIGKETREQLAEKEGRLPDSLVACIGGGSNAMGLFHPFL 251          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_METCA (Tryptophan synthase beta chain OS=Methylococcus capsulatus GN=trpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.290e-18
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYP MVRDF AVIG+E RRQ LE  G  PD L+ACVGGGSNA+GLFH FV
Sbjct:  201 TVAGPHPYPAMVRDFQAVIGREARRQMLEMTGRLPDALVACVGGGSNAIGLFHPFV 256          
The following BLAST results are available for this feature:
BLAST of EL492435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TRPB_PSEPK2.600e-1971.67Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_PSEPG2.600e-1971.67Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_PSEP12.600e-1971.67Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_GLOVI3.396e-1972.41Tryptophan synthase beta chain OS=Gloeobacter viol... [more]
TRPB_AZOVD3.396e-1972.41Tryptophan synthase beta chain OS=Azotobacter vine... [more]
TRPB_PSEU24.435e-1971.67Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB1_ARCFU4.435e-1969.49Tryptophan synthase beta chain 1 OS=Archaeoglobus ... [more]
TRPB_PSEE49.880e-1971.67Tryptophan synthase beta chain OS=Pseudomonas ento... [more]
TRPB_PSEAE9.880e-1975.00Tryptophan synthase beta chain OS=Pseudomonas aeru... [more]
TRPB_METCA1.290e-1875.00Tryptophan synthase beta chain OS=Methylococcus ca... [more]

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Properties
Property NameValue
Genbank descriptionC0321 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0321, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492435 ID=EL492435; Name=EL492435; organism=Citrus sinensis; type=EST; length=194bp
GACTGCGTAGTGATCTGTTGCCGGGCCTCATCCGTACCCCATGATGGTCA
GAGATTTCCATGCTGTGATTGGAAAAGAAACAAGAAGACAAGCATTGGAG
AAATGGGGTGGGAAACCGGATGTGCTGATTGCATGCGTTGGTGGTGGTTC
AAATGCCATGGGTCTCTTCCACGAATTTGTTACTCAGGACTCAT
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