EL492435

Overview
NameEL492435
Unique NameEL492435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPF (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf0-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.863e-17
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF AVIGKETR Q   + G  PD L+AC+GGGSNAMGLFH F+   S
Sbjct:  202 TVAGPHPYPAMVRDFQAVIGKETRDQLQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKS 261          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_METS4 (Tryptophan synthase beta chain OS=Methylobacterium sp. (strain 4-46) GN=trpB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.863e-17
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYP MVRDF +VIG+ETR Q L + G  PD L+AC+GGGSNAMGLFH F+
Sbjct:  202 TVAGPHPYPAMVRDFQSVIGRETREQMLAQEGRLPDSLVACIGGGSNAMGLFHPFL 257          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_BRASB (Tryptophan synthase beta chain OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=trpB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.863e-17
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYPMMVRDF +VIG ETR Q  E  G  PD L+AC+GGGSNAMGLFH F+   S
Sbjct:  201 TVAGPHPYPMMVRDFQSVIGDETRVQMQEAEGRLPDSLVACIGGGSNAMGLFHPFLDDPS 260          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_METJA (Tryptophan synthase beta chain OS=Methanocaldococcus jannaschii GN=trpB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.433e-17
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQD 190
            S  GPHPYPMMVR+F  VIGKE + Q LEK G  PDV++ACVGGGSNA+G F+EF+  D
Sbjct:  201 SALGPHPYPMMVREFQRVIGKELKEQILEKEGRLPDVIVACVGGGSNAIGAFYEFLDDD 259          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_CHLTE (Tryptophan synthase beta chain OS=Chlorobium tepidum GN=trpB-1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.433e-17
Identity = 38/56 (67.86%), Postives = 49/56 (87.50%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SV G HPYPMMVRDF +VIG+ETR+Q L++ G  PDV++ACVGGGSNA+G+F+EF+
Sbjct:  198 SVIGMHPYPMMVRDFQSVIGRETRQQVLDQAGRLPDVIVACVGGGSNAIGMFYEFL 253          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF5 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=trpB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.433e-17
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYP+MVRDFH VIG E R Q LE  G  PD LIACVGGGSNA+GLF+ F+
Sbjct:  195 TVAGPHPYPVMVRDFHRVIGDEARAQCLELTGRLPDCLIACVGGGSNAIGLFYPFI 250          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF2 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=trpB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.433e-17
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYP+MVRDFH VIG E R Q LE  G  PD LIACVGGGSNA+GLF+ F+
Sbjct:  195 TVAGPHPYPVMVRDFHRVIGDEARAQCLELTGRLPDCLIACVGGGSNAIGLFYPFI 250          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRAB (Tryptophan synthase beta chain 1 OS=Pyrococcus abyssi GN=trpB1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.433e-17
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SV GPHPYP++VRDF +VIG+E R Q LE  G  PDV++ACVGGGSNAMG+F+ FV   S
Sbjct:  185 SVVGPHPYPIIVRDFQSVIGREAREQILEAEGDLPDVIVACVGGGSNAMGIFYPFVKDKS 244          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_METC4 (Tryptophan synthase beta chain OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=trpB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.178e-17
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYP MVRDF +VIG ET++Q LE  G  PD LIAC+GGGSNAMGLFH F+
Sbjct:  209 TVAGPHPYPAMVRDFQSVIGIETKQQMLEMEGRLPDSLIACIGGGSNAMGLFHPFL 264          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_LEGPL (Tryptophan synthase beta chain OS=Legionella pneumophila (strain Lens) GN=trpB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.178e-17
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF A+IG E R Q +EK G  PD L+ACVGGGSNA+GLF+ F+   S
Sbjct:  195 TVAGPHPYPQMVRDFQAIIGVEARAQHMEKTGRLPDALVACVGGGSNAIGLFYPFLNDQS 254          
The following BLAST results are available for this feature:
BLAST of EL492435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TRPB_PSEPF1.863e-1768.33Tryptophan synthase beta chain OS=Pseudomonas fluo... [more]
TRPB_METS41.863e-1769.64Tryptophan synthase beta chain OS=Methylobacterium... [more]
TRPB_BRASB1.863e-1768.33Tryptophan synthase beta chain OS=Bradyrhizobium s... [more]
TRPB_METJA2.433e-1766.10Tryptophan synthase beta chain OS=Methanocaldococc... [more]
TRPB_CHLTE2.433e-1767.86Tryptophan synthase beta chain OS=Chlorobium tepid... [more]
TRPB_ACIF52.433e-1771.43Tryptophan synthase beta chain OS=Acidithiobacillu... [more]
TRPB_ACIF22.433e-1771.43Tryptophan synthase beta chain OS=Acidithiobacillu... [more]
TRPB1_PYRAB2.433e-1765.00Tryptophan synthase beta chain 1 OS=Pyrococcus aby... [more]
TRPB_METC43.178e-1771.43Tryptophan synthase beta chain OS=Methylobacterium... [more]
TRPB_LEGPL3.178e-1765.00Tryptophan synthase beta chain OS=Legionella pneum... [more]

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Properties
Property NameValue
Genbank descriptionC0321 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0321, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492435 ID=EL492435; Name=EL492435; organism=Citrus sinensis; type=EST; length=194bp
GACTGCGTAGTGATCTGTTGCCGGGCCTCATCCGTACCCCATGATGGTCA
GAGATTTCCATGCTGTGATTGGAAAAGAAACAAGAAGACAAGCATTGGAG
AAATGGGGTGGGAAACCGGATGTGCTGATTGCATGCGTTGGTGGTGGTTC
AAATGCCATGGGTCTCTTCCACGAATTTGTTACTCAGGACTCAT
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