CX674457

Overview
NameCX674457
Unique NameCX674457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.582e-14
Identity = 64/245 (26.12%), Postives = 98/245 (40.00%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 735
            +LA Q+   F ++   + +   + VG   +  +   L K+P                      I+VATPGRL+DH+  T+GF+L  L YLV+DE DRLL   +   L  +L++   +         TFL                                SAT++     L +  L +PL ++    +Y+    L    L    K K +YLV LL     +  I+FT +V  T R+  LL   G
Sbjct:  131 ELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH---------------------IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERR-------TFL-------------------------------FSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSAIIFTRTVHETQRISFLLRSLG 316          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.066e-14
Identity = 64/245 (26.12%), Postives = 98/245 (40.00%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 735
            +LA Q+   F ++   + +   + VG   +  +   L K+P                      I+VATPGRL+DH+  T+GF+L  L YLV+DE DRLL   +   L  +L++   +         TFL                                SAT++     L +  L +PL ++    +Y+    L    L    K K +YLV LL     +  I+FT +V  T R+  LL   G
Sbjct:  131 ELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH---------------------IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERR-------TFL-------------------------------FSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLG 316          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: RRP3_ASPOR (ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae GN=rrp3 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.698e-14
Identity = 62/245 (25.31%), Postives = 98/245 (40.00%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 735
            +LA Q+   F  +   + +   + VG   +  +   L K+P                      I+VATPGRL+DH+  T+GF+L +L YLV+DE DRLL   +   L  +L++   +         T+L                                SAT++     L +  L +PL +    ++++    L+   +    K K LYLV LL     + CI+F  +V  T RL   L   G
Sbjct:  131 ELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPH---------------------IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRERR-------TYL-------------------------------FSATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYLLNEFVGQSCIIFCRTVHETQRLSFFLRLLG 316          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: HAS1_CRYNE (ATP-dependent RNA helicase HAS1 OS=Cryptococcus neoformans GN=HAS1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.602e-14
Identity = 67/268 (25.00%), Postives = 115/268 (42.91%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRXSVRSKT 798
            +LALQ+  V   +      + G+ +G ++   E  +L+K                      V+++VATPGRL+DH+  T+GF  ++L  LV+DE DR+L   ++  +  +++L  S+N                                        M+ SAT T     LA++ L   PL++   ET+     + LE   ++CES  + + L   L+   ++K IVF SS  S      LLN+   + + + +  G Q+   R+ T
Sbjct:  212 ELALQIFGVAKELMQGHSQTFGVLMGGANRKAEADKLVK---------------------GVNLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLPSENRQ-------------------------------------SMLFSATQTTKVTDLARISLRPGPLYINVDETKEASTADMLEQGYVVCESDQRFMLLFTFLKKNLKKKVIVFFSSCNSVKYHAELLNY---IDVPVLDLHGKQKQQKRTNT 418          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: DBP6_PICST (ATP-dependent RNA helicase DBP6 OS=Pichia stipitis GN=DBP6 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.602e-14
Identity = 68/254 (26.77%), Postives = 108/254 (42.52%), Query Frame = 1
Query:   13 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGEL 741
            QVK  F  ++    LSV       SI +E  +++  P                     DI+V+TPGRL++HI+  +   L  L +LV+DE DRLL +++Q W   ++     D                          +   +K  P     K++ SATLT D  KL+ L    P  +   + +      + +P  L  Y +     ++ +KPL L   LL++      ++FT S E++ RLC LL   FG+L
Sbjct:  248 QVKATFVQLSRGTNLSVVSLRNDVSIKEEGIKIVNSPP--------------------DIIVSTPGRLVEHIS-NKSINLNSLQFLVIDEADRLLNQSFQNWCQVLISSLEGD------------------------VNIAEEWKITPQ----KLIFSATLTTDSGKLSALKFQKPRLVIVNDRKQLVNEIFNVPSSLSEYTIQFGTAKASIKPLILAKYLLENNKLSNVLIFTKSNEASIRLCKLLELMFGKL 452          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: RRP3_KLULA (ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces lactis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.850e-14
Identity = 60/242 (24.79%), Postives = 100/242 (41.32%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 726
            +LA Q+K+ F ++   +G+     VG  S+ D+  +L+++P                      I++ATPGRLMDH+  T+GF L  L YLV+DE DRLL   +   L  +L +  +     +                                     + SAT+T   +KL +  L +P+       +Y+  + L    ++    LK  +L+ LL     +  IVFT +  +  R+  L N
Sbjct:  146 ELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH---------------------IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTY-------------------------------------LFSATMTSKIDKLQRASLTNPVKCAV-SNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCN 328          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: RRP3_NEUCR (ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa GN=rrp-3 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.749e-13
Identity = 64/245 (26.12%), Postives = 96/245 (39.18%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 735
            +LA Q+   F A+   + L   L +G   +  +   L K+P                      ++VATPGRL+DH+  T+GF+L  + YLV+DE DRLL   +   L  +L+               FLP         RR                  + SAT++     L +  L  PL ++    +Y     L+S  +      K  YLV L      +  I+FT +V  T R+  LL   G
Sbjct:  169 ELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPH---------------------VIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILK---------------FLPRE-------RR----------------TFLFSATMSSKVESLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHMHKDTYLVYLCNEFAGQTIIIFTRTVLETQRIAILLRTLG 354          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: RRP3_LODEL (ATP-dependent rRNA helicase RRP3 OS=Lodderomyces elongisporus GN=RRP3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.679e-13
Identity = 55/245 (22.45%), Postives = 109/245 (44.49%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 735
            +LA Q+K+ F A+  ++GL     +G  S+ ++  +L+++P                      +++ATPGRL+DH+  T+GF+L+ L YLV+DE DR++   Y   +  +L                                     K  P  + +  + +AT++++  K  +  L+ P+ +   +   K+P++L+    +     K   L+ ++     ++ I+FT +V  T R C +L + G
Sbjct:  177 ELAFQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMRKPH---------------------VIIATPGRLIDHLEHTKGFSLKKLQYLVMDEVDRMIDLDYAKAIDQIL-------------------------------------KQIPSHQRITYLYTATMSREIEKFKR-SLNSPVQVEIVKLE-KVPDKLKQTMCLTSPNTKDTRLIQIVNLDSMKRVIIFTRTVVHTRRCCLMLLNLG 361          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: RRP3_MAGGR (ATP-dependent rRNA helicase RRP3 OS=Magnaporthe grisea GN=RRP3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.133e-12
Identity = 64/241 (26.56%), Postives = 97/241 (40.25%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 723
            +LA Q+   F A+  ++ L   + VG   +  + + L K+P                      I+VATPGRL+DH+  T+GF+L  L +LV+DE DRLL   +   L  +L+               FLP         RR                  + SAT++     L +  L  PL ++   ++ K    L    L    K K +YL+ L      +  IVFT +V    R+  LL
Sbjct:  189 ELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPH---------------------IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILK---------------FLPRE-------RR----------------TFLFSATMSSKVESLQRASLRDPLKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSILL 370          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: DRS1_VANPO (ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.133e-12
Identity = 68/261 (26.05%), Postives = 108/261 (41.38%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY-KLICESKLKP---LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 768
            +LA+Q+ DV   I   V GL+ GLAVG  ++  +  EL  RP                     DI++ATPGR +DH+  +  F ++ +  LV+DE DR+L E +Q  L  +L               T LPS                       +   ++ SAT+      L  L L  P+ +     +       + + ++     LKP    YL+  L   G+++ +VF +  E  H+L  +L   G L +K+ E  G
Sbjct:  313 ELAIQIADVGKKIGKYVSGLTFGLAVGGLNLRQQEQELKTRP---------------------DIVIATPGRFIDHVRNSSSFNVDSVEVLVMDEADRMLEEGFQEELNEIL---------------TLLPS-----------------------KRQTLLFSATMNSRIKSLISLSLRKPVRIMINPPKQAAARLTQEFVRIRKRDHLKPALLFYLIRKLDGTGQKRIVVFVARKEMAHKLRIIL---GLLGMKVGELHG 511          
The following BLAST results are available for this feature:
BLAST of CX674457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RRP3_NEOFI1.582e-1426.12ATP-dependent rRNA helicase rrp3 OS=Neosartorya fi... [more]
RRP3_ASPFU2.066e-1426.12ATP-dependent rRNA helicase rrp3 OS=Aspergillus fu... [more]
RRP3_ASPOR2.698e-1425.31ATP-dependent rRNA helicase rrp3 OS=Aspergillus or... [more]
HAS1_CRYNE4.602e-1425.00ATP-dependent RNA helicase HAS1 OS=Cryptococcus ne... [more]
DBP6_PICST4.602e-1426.77ATP-dependent RNA helicase DBP6 OS=Pichia stipitis... [more]
RRP3_KLULA7.850e-1424.79ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces ... [more]
RRP3_NEUCR1.749e-1326.12ATP-dependent rRNA helicase rrp-3 OS=Neurospora cr... [more]
RRP3_LODEL8.679e-1322.45ATP-dependent rRNA helicase RRP3 OS=Lodderomyces e... [more]
RRP3_MAGGR1.133e-1226.56ATP-dependent rRNA helicase RRP3 OS=Magnaporthe gr... [more]
DRS1_VANPO1.133e-1226.05ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_6E10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-6E10-I20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674457 ID=CX674457; Name=CX674457; organism=Citrus sinensis; type=EST; length=803bp
GATCTAGCTTTGCAGGTCAAGGATGTTTTCGCTGCGATTGCACCTGCAGT
GGGTTTGTCTGTTGGTTTGGCTGTGGGTCAATCTTCTATTGCTGATGAAA
TTTCGGAGCTTATTAAGAGACCTAAGCTCGAGGCAGGAATCTGTTATGAC
CCTGAAGATGTTTTGCAAGAGTTACAGAGTGCAGTAGATATATTGGTGGC
AACTCCAGGAAGGCTAATGGACCATATCAATGCTACTAGGGGATTTACCC
TCGAGCATCTCTGTTACCTTGTTGTTGACGAAACTGATCGATTGCTTAGG
GAGGCATATCAGGCTTGGCTGCCCACTGTGCTCCAATTAACTCGATCTGA
TAATGAAAACCGCTTTTCTGATGCAAGTACTTTTCTGCCTTCAGCATTTG
GCTCTTTAAAAACCATAAGAAGATGTGGTGTTGAAAGGGGCTTTAAGGAC
AAACCTTATCCTAGGCTTGTGAAGATGGTTTTATCTGCCACGTTAACCCA
AGATCCAAATAAGCTCGCTCAGCTTGATCTGCATCACCCTTTATTCCTGA
CCACTGGGGAAACTCGTTATAAGCTCCCAGAAAGATTGGAGTCCTACAAA
CTGATTTGTGAGTCGAAGCTGAAGCCCTTGTATTTGGTTGCACTTCTTCA
AAGTTTAGGAGAGGAGAAATGTATTGTCTTCACATCATCTGTGGAGTCAA
CTCACCGTCTCTGTACACTACTGAACCATTTTGGTGAATTGAGAATAAAG
ATAAAGGAGTATTCAGGTCTTCAACGACNATCTGTAAGAAGCAAGACGTT
GAA
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