CX674457

Overview
NameCX674457
Unique NameCX674457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: RRP3_CHAGB (ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum GN=RRP3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.480e-12
Identity = 63/245 (25.71%), Postives = 97/245 (39.59%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 735
            +LA Q+   F A+   + L   L +G   +  +   L K+P                      ++VATPGRL+DH+  T+GF+L +L YLV+DE DRLL   +   L  +L+               FLP         RR                  + SAT++     L +  L  PL ++   ++Y+    L    +      K  YL+ L      +  I+FT +V  T R+  LL   G
Sbjct:  144 ELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGKKPH---------------------VVVATPGRLLDHLEKTKGFSLRNLRYLVMDEADRLLDMDFGPILDKILK---------------FLPRE-------RR----------------TFLFSATMSSKVESLQRACLRDPLKVSISSSKYQTVSTLVQNYVFIPHTHKDTYLIYLCNEFAGQTIIIFTRTVIETQRIAILLRTLG 329          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: HAS1_DEBHA (ATP-dependent RNA helicase HAS1 OS=Debaryomyces hansenii GN=HAS1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.525e-12
Identity = 59/217 (27.19%), Postives = 100/217 (46.08%), Query Frame = 1
Query:  166 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFL-TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL----RIKIKEYSGLQRXSVRSKT 798
            ++L   V++L+ATPGRL+DH+  T+GF  +++  LV+DE DR+L   ++  +  ++++    NE+R S                                   M+ SAT T     LA++ L   PL++    E+       LE   ++CES  + L L + L+   ++K IVF SS       C  + +FGEL     + + +  G Q+   R+ T
Sbjct:  221 EKLMKGVNLLIATPGRLLDHLQNTQGFVFKNVKALVIDEADRILEIGFEEEMKQIIKIL--PNEDRQS-----------------------------------MLFSATQTTKVEDLARISLRPGPLYINVASESEASTVAGLEQGYVVCESDKRFLLLFSFLKRNVKKKIIVFLSS-------CNCVKYFGELLNYIDLPVLDLHGKQKQQKRTNT 393          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: HAS1_PHANO (ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria nodorum GN=HAS1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.307e-12
Identity = 55/210 (26.19%), Postives = 96/210 (45.71%), Query Frame = 1
Query:  166 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTG-ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG----ELRIKIKEYSGLQR 777
            ++L   V++L+ATPGRL+DH++ T+GF  ++L  L++DE DR+L   ++  + +++++  +D +                                       M+ SAT T     LA++ L   PL++       +   E LE   +IC+S  +   L + L+   ++K IVF SS  S      LLN+      EL  K+K+ +   R
Sbjct:  248 EKLAKGVNLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRILEVGFEDEMRSIIKILPTDRQT--------------------------------------MLFSATQTTKVEDLARISLKAGPLYINVDYRKEHSTVEGLEQGYVICDSDTRFRLLFSFLKKHQKKKVIVFFSSCNSVKFYAELLNYIDLPVLELHGKLKQQARTNR 419          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: HAS1_MAGGR (ATP-dependent RNA helicase HAS1 OS=Magnaporthe grisea GN=HAS1 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.307e-12
Identity = 56/213 (26.29%), Postives = 98/213 (46.01%), Query Frame = 1
Query:  166 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRXSVRSKT 798
            ++L   V++L+ATPGRL+DH+  T  F  ++L  LV+DE DR+L   ++  +  ++++   + ++                                      M+ SAT T     LA++ L   PL+L   E + Y   E LE   ++CE+  + + L + LQ + ++K IVF SS  S      LLN+   +  ++ +  G Q+   R+ T
Sbjct:  229 EKLSKGVNLLIATPGRLLDHLQNT-PFVFKNLRSLVIDEADRILEIGFEDEMRQIIKILPKERQS--------------------------------------MLFSATQTTKVEDLARVSLRPGPLYLNVDEEKEYSTVEGLEQGYVVCEADKRFILLFSFLQKMKKKKIIVFFSSCNSVKYYAELLNY---IDCQVLDLHGKQKQQKRTNT 399          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: DBP6_YARLI (ATP-dependent RNA helicase DBP6 OS=Yarrowia lipolytica GN=DBP6 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.253e-11
Identity = 64/241 (26.56%), Postives = 104/241 (43.15%), Query Frame = 1
Query:    4 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 723
            L +QV+DV   ++    LSV       ++ ++ S   +R  LE                  DI+VA PGRL++ +         ++ +LVVDE DRLL + Y  W  +VLQ    +N+ R     T L   +                      +  ++ SATLT +P  +A +D+H+P +F+      Y +P+ L        +  KPL L  LL      + +VFT S E+  R+  ++
Sbjct:  278 LVMQVRDVLENLSKGSSLSV------VALRNDRSTKRERAVLETA----------------DIVVAAPGRLVEQVKENPEL-FSYIEFLVVDEADRLLGQDYYDWA-SVLQ----NNQQRAQAGKTNLTEHY-------------------VRNMQTLIFSATLTANPEHIASMDIHNPGVFVIGSSDSYSIPKSLTEIVTHVSAAEKPLMLCELLVQRDINRGVVFTKSSETAARVARMM 471          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: HAS1_YARLI (ATP-dependent RNA helicase HAS1 OS=Yarrowia lipolytica GN=HAS1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.637e-11
Identity = 54/213 (25.35%), Postives = 95/213 (44.60%), Query Frame = 1
Query:  166 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH-PLFLTTGETRY-KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRXSVRSKT 798
            ++L   V++LV TPGRL+DH+  ++GF  ++L  L++DE DR+L   ++  +  ++++   + ++                                      M+ SAT T     LA++ L   PL+L   E       E LE   ++C+S  + L L + L+    +K IVF SS  S      LLN+   + + + +  G Q+   R+ T
Sbjct:  248 EKLNKGVNLLVCTPGRLLDHLQNSQGFVFKNLKALIIDEADRILEIGFEQEMKEIIKILPKERQS--------------------------------------MLFSATQTTKVEDLARISLKKGPLYLNVDEHNVSSTAEGLEQGYVVCDSDKRFLLLFSFLKRNAGKKIIVFLSSCNSVKFYGELLNY---IDLPVLDLHGKQKQQKRTNT 419          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: DRS1_ASHGO (ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.637e-11
Identity = 63/250 (25.20%), Postives = 104/250 (41.60%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY-KLICESKLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFG 735
            +LA+QV DV   +   V GL+ GLAVG  ++  +   L  RP                     DI++ATPGR++DHI  +  F+++ +  LV+DE DR+L + +Q  L  ++ L  S  +                                       ++ SAT+     +L  L L  P+ +     +    +  + + +L     LKP  L  LL+ L   G+++ +VF +  E  HRL  +L   G
Sbjct:  301 ELAIQVADVGKKLGKFVSGLTFGLAVGGLNLRQQEQALKLRP---------------------DIVIATPGRIIDHIRNSASFSVDSVEVLVIDEADRMLEDGFQDELNEIMSLIPSKRQT--------------------------------------LLFSATMNSRIKQLISLSLKKPVRIMIDPPKQAANKLTQEFVRLRKREHLKPALLYHLLRKLDSTGQKRIVVFVARKEVAHRLRVILGLLG 491          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: HAS1_LODEL (ATP-dependent RNA helicase HAS1 OS=Lodderomyces elongisporus GN=HAS1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.138e-11
Identity = 70/263 (26.62%), Postives = 115/263 (43.73%), Query Frame = 1
Query:   37 IAPAVGLSVGLAVGQSSIADEI----SELIKRPKLEAGICYDPEDVLQE---LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFL-TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRXSVRSKT 798
            I P  G +V +      +A +I     +L++      GI     D  QE   L   V++LVATPGRL+DH+  T+GF   +L  LV+DE DR+L   ++  +  ++++    NE+R +                                   M+ SAT T     LA++ L   PL++    E      + LE   ++C+S  + L L + L+   ++K IVF SS  S      LLN+   + + + +  G Q+   R+ T
Sbjct:  160 IKPRNGTAVIIITPTRELALQIFGVARQLMEYHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNTQGFVFLNLKALVIDEADRILEIGFEEEMKQIIKIL--PNEDRQT-----------------------------------MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFLKRNIKKKIIVFLSSCNSVKFYSELLNY---IDLPVLDLHGKQKQQKRTNT 382          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: DRS1_KLULA (ATP-dependent RNA helicase DRS1 OS=Kluyveromyces lactis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 60/250 (24.00%), Postives = 103/250 (41.20%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY-KLICESKLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFG 735
            +LA+QV DV   I   V GL+ GLAVG  ++  +   L  RP                     DI++ATPGR +DH+  +  F+++ +  LV+DE DR+L E +Q  L  ++ L  S  +                                       ++ SAT+     +L  L L  P+ +     +    +  + + ++     LKP  L  L++ L    +++ +VF +  E+ H+L  +L   G
Sbjct:  315 ELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRP---------------------DIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQT--------------------------------------LLFSATMNSKIKQLISLSLKKPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLG 505          
The following BLAST results are available for this feature:
BLAST of CX674457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RRP3_CHAGB1.480e-1225.71ATP-dependent rRNA helicase RRP3 OS=Chaetomium glo... [more]
HAS1_DEBHA2.525e-1227.19ATP-dependent RNA helicase HAS1 OS=Debaryomyces ha... [more]
HAS1_PHANO4.307e-1226.19ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria n... [more]
HAS1_MAGGR4.307e-1226.29ATP-dependent RNA helicase HAS1 OS=Magnaporthe gri... [more]
DBP6_YARLI1.253e-1126.56ATP-dependent RNA helicase DBP6 OS=Yarrowia lipoly... [more]
HAS1_YARLI1.637e-1125.35ATP-dependent RNA helicase HAS1 OS=Yarrowia lipoly... [more]
DRS1_ASHGO1.637e-1125.20ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii... [more]
HAS1_LODEL2.138e-1126.62ATP-dependent RNA helicase HAS1 OS=Lodderomyces el... [more]
DRS1_KLULA8.123e-1124.00ATP-dependent RNA helicase DRS1 OS=Kluyveromyces l... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_6E10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-6E10-I20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674457 ID=CX674457; Name=CX674457; organism=Citrus sinensis; type=EST; length=803bp
GATCTAGCTTTGCAGGTCAAGGATGTTTTCGCTGCGATTGCACCTGCAGT
GGGTTTGTCTGTTGGTTTGGCTGTGGGTCAATCTTCTATTGCTGATGAAA
TTTCGGAGCTTATTAAGAGACCTAAGCTCGAGGCAGGAATCTGTTATGAC
CCTGAAGATGTTTTGCAAGAGTTACAGAGTGCAGTAGATATATTGGTGGC
AACTCCAGGAAGGCTAATGGACCATATCAATGCTACTAGGGGATTTACCC
TCGAGCATCTCTGTTACCTTGTTGTTGACGAAACTGATCGATTGCTTAGG
GAGGCATATCAGGCTTGGCTGCCCACTGTGCTCCAATTAACTCGATCTGA
TAATGAAAACCGCTTTTCTGATGCAAGTACTTTTCTGCCTTCAGCATTTG
GCTCTTTAAAAACCATAAGAAGATGTGGTGTTGAAAGGGGCTTTAAGGAC
AAACCTTATCCTAGGCTTGTGAAGATGGTTTTATCTGCCACGTTAACCCA
AGATCCAAATAAGCTCGCTCAGCTTGATCTGCATCACCCTTTATTCCTGA
CCACTGGGGAAACTCGTTATAAGCTCCCAGAAAGATTGGAGTCCTACAAA
CTGATTTGTGAGTCGAAGCTGAAGCCCTTGTATTTGGTTGCACTTCTTCA
AAGTTTAGGAGAGGAGAAATGTATTGTCTTCACATCATCTGTGGAGTCAA
CTCACCGTCTCTGTACACTACTGAACCATTTTGGTGAATTGAGAATAAAG
ATAAAGGAGTATTCAGGTCTTCAACGACNATCTGTAAGAAGCAAGACGTT
GAA
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