CX043282

Overview
NameCX043282
Unique NameCX043282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9984 contig Csv1_Contig9984:81..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDH_MYCTU (Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis GN=icd PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.108e-77
Identity = 142/206 (68.93%), Postives = 166/206 (80.58%), Query Frame = -2
Query:  230 KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 847
            KWP+YLSTKNTILK YDG FKD F+ VYE  +K++FEAAG+ YEHRLIDDMVA  LK EGGYVWACKNYDGDVQSD +AQG+GSLGLMTSVL+  DGKT+EAEAAHGTVTRHYR +Q G  TSTN IASIFAW+RGL HR KLD    ++DF  KLE+  I TVESGKMTKDLA++I       + +LN+EEF+DA+AD+L   L+
Sbjct:  207 KWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAAGLTYEHRLIDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGKTVEAEAAHGTVTRHYRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLESVVIATVESGKMTKDLAILIG----PEQDWLNSEEFLDAIADNLEKELA 408          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDH_MYCBO (Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis GN=icd PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.108e-77
Identity = 142/206 (68.93%), Postives = 166/206 (80.58%), Query Frame = -2
Query:  230 KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 847
            KWP+YLSTKNTILK YDG FKD F+ VYE  +K++FEAAG+ YEHRLIDDMVA  LK EGGYVWACKNYDGDVQSD +AQG+GSLGLMTSVL+  DGKT+EAEAAHGTVTRHYR +Q G  TSTN IASIFAW+RGL HR KLD    ++DF  KLE+  I TVESGKMTKDLA++I       + +LN+EEF+DA+AD+L   L+
Sbjct:  207 KWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAAGLTYEHRLIDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGKTVEAEAAHGTVTRHYRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLESVVIATVESGKMTKDLAILIG----PEQDWLNSEEFLDAIADNLEKELA 408          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHP_SCHPO (Probable isocitrate dehydrogenase [NADP], mitochondrial OS=Schizosaccharomyces pombe GN=idp1 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.146e-74
Identity = 137/207 (66.18%), Postives = 163/207 (78.74%), Query Frame = -2
Query:  233 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 853
            QKK PLYLSTKNTILKKYDGRFKD FQEVYE+++K KFE  G+WY+HRLIDDMVA A+KS GG+VWACKNYDGDV SD +AQ +GSLGLMTSVL+ P+G+T E+EAAHGTV RHY  + KG +TSTNSIASIFAW+RGLAHR +LD N RL+ F   LE AC+  VE G MTKDL L+      +   Y++T EF+DAV  +L + L
Sbjct:  212 QKKMPLYLSTKNTILKKYDGRFKDTFQEVYESDYKQKFEELGLWYQHRLIDDMVAQAIKSNGGFVWACKNYDGDVMSDVVAQAYGSLGLMTSVLIHPNGRTFESEAAHGTVQRHYMQYLKGKKTSTNSIASIFAWTRGLAHRGRLDGNERLVKFANALEHACVRCVEKGIMTKDLYLL----SKSPNGYVDTFEFLDAVKSELDSEL 414          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDH1_CANTR (Isocitrate dehydrogenase [NADP], mitochondrial OS=Candida tropicalis GN=IDP1 PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.267e-73
Identity = 140/204 (68.63%), Postives = 162/204 (79.41%), Query Frame = -2
Query:  242 KKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGK-MTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 850
            K  PLY+STKNTILKKYDGRFKDIFQ++YE ++ ++FE  G+WYEHRLIDDMVA  +KS+GG+V A KNYDGDVQSD +AQGFGSLGLMTS L+ PDGK  EAEAAHGTVTRHYR HQ+G ETSTNSIASIFAW+RGLA R KLD    ++DF  KLE A I TVE  + MTKDLAL +   K  R  Y+ T EF+DAVAD L+
Sbjct:  228 KGLPLYMSTKNTILKKYDGRFKDIFQQIYEQDYAAEFEKQGLWYEHRLIDDMVAQMIKSKGGFVMALKNYDGDVQSDIVAQGFGSLGLMTSALMTPDGKAYEAEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLAQRGKLDETPDVVDFASKLEQATIDTVEVDRIMTKDLALAM--GKTDRSAYVTTTEFLDAVADRLK 429          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDH_SPHYA (Isocitrate dehydrogenase [NADP] OS=Sphingomonas yanoikuyae GN=icd PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 6.289e-73
Identity = 135/205 (65.85%), Postives = 162/205 (79.02%), Query Frame = -2
Query:  230 WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 844
            WP+YLSTKNTILK YDGRFKD+FQEV++A +  KF+AAGI YEHRLIDDMVA ALK  G +VWACKNYDGDVQSD +AQGFGSLGLMTSVL+ PDGKT+EAEAAHGTVTRHYR HQ+G  TSTN IASIFAW++GL+ R K D+   ++ F E LE  CI TVE G MTKDLAL+I       + ++ TE+F +A+  +L A ++
Sbjct:  203 WPVYLSTKNTILKAYDGRFKDLFQEVFDAEFADKFKAAGIVYEHRLIDDMVASALKWSGKFVWACKNYDGDVQSDTVAQGFGSLGLMTSVLLSPDGKTVEAEAAHGTVTRHYRQHQQGKATSTNPIASIFAWTQGLSFRGKFDDTPDVVKFAETLEQVCIKTVEGGAMTKDLALLIGPD----QAWMTTEQFFEAIRVNLEAEMA 403          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHC_YEAST (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Saccharomyces cerevisiae GN=IDP2 PE=1 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 6.289e-73
Identity = 137/212 (64.62%), Postives = 165/212 (77.83%), Query Frame = -2
Query:  221 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTV-ESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA 853
            ++K PLY +TKNTILKKYDG+FKD+F+ +Y  ++K KFE+ GIWYEHRLIDDMVA  LKS+GGY+ A KNYDGDV+SD +AQGFGSLGLMTSVL+ PDGKT E+EAAHGTVTRH+R HQ+G ETSTNSIASIFAW+RG+  R KLDN   ++ F + LE+A + TV E G MTKDLALI+   K  R  Y+ TEEFIDAV   L+      A
Sbjct:  202 ERKLPLYSTTKNTILKKYDGKFKDVFEAMYARSYKEKFESLGIWYEHRLIDDMVAQMLKSKGGYIIAMKNYDGDVESDIVAQGFGSLGLMTSVLITPDGKTFESEAAHGTVTRHFRQHQQGKETSTNSIASIFAWTRGIIQRGKLDNTPDVVKFGQILESATVNTVQEDGIMTKDLALIL--GKSERSAYVTTEEFIDAVESRLKKEFEAAA 411          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHP_YEAST (Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces cerevisiae GN=IDP1 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.390e-72
Identity = 142/207 (68.60%), Postives = 162/207 (78.26%), Query Frame = -2
Query:  233 KKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTV-ESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 850
            KK  L+LSTKNTILKKYDGRFKDIFQEVYEA +KSKFE  GI YEHRLIDDMVA  +KS+GG++ A KNYDGDVQSD +AQGFGSLGLMTS+LV PDGKT E+EAAHGTVTRHYR +QKG ETSTNSIASIFAWSRGL  R +LDN   L  F   LE+A + TV + G MTKDLAL    ++  R  Y+ TEEF+DAV   L+  +
Sbjct:  220 KKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTKDLALACGNNE--RSAYVTTEEFLDAVEKRLQKEI 424          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHP_ASPNG (Isocitrate dehydrogenase [NADP], mitochondrial OS=Aspergillus niger GN=icdA PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 8.500e-70
Identity = 134/210 (63.81%), Postives = 158/210 (75.24%), Query Frame = -2
Query:  224 KKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTV-ESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGK 850
            K  PLY+STKNTILK+YDGRFKDIFQE+YE+ ++  FEA  +WYEHRLIDDMVA  +KSEGG+V A KNYDGDVQSD +AQGFGSLGLMTS LV P G+  E+EAAHGTVTRHYR HQKG ETSTN IASIFAW+RGL  R KLD    ++ F E+LE ACI  V + G MTKDLAL     +  RE ++ T E++ AV   L+A L  +
Sbjct:  290 KGLPLYMSTKNTILKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVAQMIKSEGGFVMALKNYDGDVQSDIVAQGFGSLGLMTSTLVTPTGEAFESEAAHGTVTRHYREHQKGRETSTNPIASIFAWTRGLIQRGKLDETPDVVTFAEELERACIEVVNDEGIMTKDLALAC--GRKEREAWVTTREYMAAVERRLKANLKSR 497          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDH2_CANTR (Isocitrate dehydrogenase [NADP] peroxisomal OS=Candida tropicalis GN=IDP2 PE=1 SV=3)

HSP 1 Score: 262.692 bits (670), Expect = 1.894e-69
Identity = 135/208 (64.90%), Postives = 158/208 (75.96%), Query Frame = -2
Query:  233 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGK-MTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 853
            ++K  L+ STKNTILKKYDG+FKDIF+ +Y + +K+K +  GIWYEHRLIDDMVA  LKS+GGY+ A KNYDGDVQSD +AQGFGSLGLMTSVLV PDGK  E+EAAHGTVTRHYR HQ+G ETSTNSIASI+AW+RGL  R KLD+   ++ F E+LE A I TV     MTKDLAL     K  R  Y+ TEEFID VA+ L   L
Sbjct:  204 ERKLNLFSSTKNTILKKYDGKFKDIFEGLYASKYKTKMDELGIWYEHRLIDDMVAQMLKSKGGYIIAMKNYDGDVQSDIVAQGFGSLGLMTSVLVTPDGKAFESEAAHGTVTRHYRQHQQGKETSTNSIASIYAWTRGLIQRGKLDDTPEVVKFAEELEKAVIETVSKDNIMTKDLALT--QGKTDRSSYVTTEEFIDGVANRLNKNL 409          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHH_YEAST (Isocitrate dehydrogenase [NADP] OS=Saccharomyces cerevisiae GN=IDP3 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.960e-66
Identity = 127/205 (61.95%), Postives = 156/205 (76.10%), Query Frame = -2
Query:  242 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVE-SGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 853
            ++K PL+ +TKNTILK YD +FK IF  +++  +K KF+A  I YEHRLIDDMVA  LKS+GG++ A KNYDGDVQSD +AQGFGSLGLMTS+L+ PDGKT E+EAAHGTVTRH+R HQ+G ETSTNSIASIFAW+R +  R KLDN   ++ F   LE A + TV+  GKMTKDLAL++   K  R  Y+ TEEFID VA  L+
Sbjct:  202 KRKLPLFFTTKNTILKNYDNQFKQIFDNLFDKEYKEKFQALKITYEHRLIDDMVAQMLKSKGGFIIAMKNYDGDVQSDIVAQGFGSLGLMTSILITPDGKTFESEAAHGTVTRHFRKHQRGEETSTNSIASIFAWTRAIIQRGKLDNTDDVIKFGNLLEKATLDTVQVGGKMTKDLALML--GKTNRSSYVTTEEFIDEVAKRLQ 404          
The following BLAST results are available for this feature:
BLAST of CX043282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDH_MYCTU1.108e-7768.93Isocitrate dehydrogenase [NADP] OS=Mycobacterium t... [more]
IDH_MYCBO1.108e-7768.93Isocitrate dehydrogenase [NADP] OS=Mycobacterium b... [more]
IDHP_SCHPO1.146e-7466.18Probable isocitrate dehydrogenase [NADP], mitochon... [more]
IDH1_CANTR1.267e-7368.63Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDH_SPHYA6.289e-7365.85Isocitrate dehydrogenase [NADP] OS=Sphingomonas ya... [more]
IDHC_YEAST6.289e-7364.62Isocitrate dehydrogenase [NADP] cytoplasmic OS=Sac... [more]
IDHP_YEAST2.390e-7268.60Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_ASPNG8.500e-7063.81Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDH2_CANTR1.894e-6964.90Isocitrate dehydrogenase [NADP] peroxisomal OS=Can... [more]
IDHH_YEAST1.960e-6661.95Isocitrate dehydrogenase [NADP] OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A10-B20-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043282 ID=CX043282; Name=CX043282; organism=Citrus sinensis; type=EST; length=854bp
TATAACAAGCCATGTTCAAGACATTTGCTTGCATGAAAATGAGAGTTTGT
CGATCAACAGGAAAGCAGTCTATTGTAGCAATTAGAAGAGAACCAAATCC
CAATCCCCAATTTTCCCCTCTTCAATTATTTCTTCTCAGCATAATATGAA
AAAGATAACCAAAGGAAGCTTCCCCAAGTCTTTACCTTTGAATGTGTAGC
ATCTGCAACAAAAAAAATCATGCTTTGCCAGAGAGTCTTGCTCTTAGATC
GTCGGCCACAGCATCAATGAACTCTTCAGTATTCAGATAGTGTTCCCTAG
TCATCTTAGATCCATGGATAATAAGTGCAAGATCCTTGGTCATCTTCCCA
GATTCAACAGTGCCAATACATGCAGCTTCTAGTTTCTCAGTAAAATCCAA
TAGCCTAGCATTGTTGTCCAACTTCGCCCTATGTGCAAGCCCTCGTGACC
AAGCAAAGATGGAGGCTATGCTGTTTGTGCTAGTTTCACCACCTTTCTGA
TGAACTCTGTAGTGTCGGGTAACTGTTCCATGGGCTGCTTCGGCTTCAAT
TGTCTTCCCATCAGGGCATACCAGTACAGATGTCATCAATCCAAGAGATC
CAAACCCTTGAGCTAGGAAATCACTCTGGACATCTCCATCATAATTTTTG
CAAGCCCACACATAACCTCCTTCACTTTTGAGAGCATAAGCTACCATATC
ATCAATGAGACGATGTTCATACCATATGCCAGCAGCTTCAAACTTTGACT
TCCAGTTTGCCTCATAAACCTCTTGAAATATGTCTTTGAATCTTCCATCA
TACTTCTTAAGGATAGTGTTTTTTGTACTAAGATAGAGTGGCCACTTCTT
CTGA
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