CX043299

Overview
NameCX043299
Unique NameCX043299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043299 vs. ExPASy Swiss-Prot
Match: LOX15_HUMAN (Arachidonate 15-lipoxygenase OS=Homo sapiens GN=ALOX15 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.835e-17
Identity = 76/234 (32.48%), Postives = 101/234 (43.16%), Query Frame = 2
Query:  152 DRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEI-GGMI-----SVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPG 835
            +R +  W  D  F  Q L G NP  +R     P +         PP        +EKE+ GG +     S+ + IK   +     H L  P V                +  L P G L P+ I+L  P     P    +FLP+        W LAK  V + D   H+L SH LR H   E  V+AT R L  +HPI++L+ PH RYT+EIN  AR  LV+  GI +   S G
Sbjct:  216 ERVRDSWKEDALFGYQFLNGANPVVLRRSAHLPARLVF------PPGMEELQAQLEKELEGGTLFEADFSLLDGIKANVILCSQQH-LAAPLV----------------MLKLQPDGKLLPMVIQLQLPRTGSPPP--PLFLPT---DPPMAWLLAKCWVRSSDFQLHELQSHLLRGHLMAEVIVVATMRCLPSIHPIFKLIIPHLRYTLEINVRARTGLVSDMGIFDQIMSTG 421          
BLAST of CX043299 vs. ExPASy Swiss-Prot
Match: LX12L_MOUSE (Arachidonate 12-lipoxygenase, leukocyte-type OS=Mus musculus GN=Alox12l PE=1 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 1.407e-16
Identity = 70/230 (30.43%), Postives = 103/230 (44.78%), Query Frame = 2
Query:  152 DRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLT--PAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPG 835
            +R +  W  D  F  Q L G NP  ++  T  P +    P +          E ++ ++      +E +K+  LF  D+   FL    K   +  +  Y +  +  L   P G L PIAI+L  P     P    +F P     +   W LAK  V + D   H+L +H LR H   E + +AT R L  +HP+++LL PH  YTMEIN  AR  L++  G  +   S G
Sbjct:  217 ERVRNSWKEDAFFGYQFLNGANPMVLKRSTCLPARLVFPPGM----------EKLQAQL------DEELKKGTLFEADF---FLLDGIKANVILCSQQYLAAPLVMLKLQPDGQLLPIAIQLELPKTGSTPP--PIFTPLDPPMD---WLLAKCWVRSSDLQLHELQAHLLRGHLVAEVFAVATMRCLPSVHPVFKLLVPHLLYTMEINVRARSDLISERGFFDKVMSTG 422          
BLAST of CX043299 vs. ExPASy Swiss-Prot
Match: LOX12_HUMAN (Arachidonate 12-lipoxygenase, 12S-type OS=Homo sapiens GN=ALOX12 PE=1 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 1.407e-16
Identity = 71/222 (31.98%), Postives = 102/222 (45.95%), Query Frame = 2
Query:  170 WFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPG 835
            W  DE FS Q L G NP  +R  T  P +  L   +          E ++ ++      E+ ++   LF  D+  L       +R  K   L     +  + P G L+P+ I++ +PP    P    +FLPS        W LAK+ V   D   H++  H L TH   E   +AT R L  +HPI++ L PH RYTMEIN  AR  L++  GI + + S G
Sbjct:  222 WQDDELFSYQFLNGANPMLLRRSTSLPSRLVLPSGM----------EELQAQL------EKELQNGSLFEADFILLDGIPANVIRGEKQY-LAAPLVMLKMEPNGKLQPMVIQI-QPPNPSSPT-PTLFLPS---DPPLAWLLAKSWVRNSDFQLHEIQYHLLNTHLVAEVIAVATMRCLPGLHPIFKFLIPHIRYTMEINTRARTQLISDGGIFDKAVSTG 421          
BLAST of CX043299 vs. ExPASy Swiss-Prot
Match: LX12L_RAT (Arachidonate 12-lipoxygenase, leukocyte-type OS=Rattus norvegicus GN=Alox12l PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.400e-16
Identity = 69/230 (30.00%), Postives = 104/230 (45.22%), Query Frame = 2
Query:  152 DRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLT--PAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPG 835
            +R +  W  D  F  Q L G NP  ++  T  P +    P +          E ++ ++       + +++  LF  D+   FL    K   +  +  Y +  +  L   P G L PIAI+L  P     P    +F PS    +   W LAK  V + D   H+L +H LR H   E + +AT R L  +HP+++LL PH  YTMEIN  AR  L++  G  + + S G
Sbjct:  217 ERVRNSWKEDAFFGYQFLNGANPMVLKRSTCLPARLVFPPGM----------EKLQAQLN------KELQKGTLFEADF---FLLDGIKANVILCSQQYLAAPLVMLKLMPDGQLLPIAIQLELPKTGSTPP--PIFTPSDPPMD---WLLAKCWVRSSDLQLHELQAHLLRGHLMAELFAVATMRCLPSVHPVFKLLVPHLLYTMEINVRARSDLISERGFFDKAMSTG 422          
BLAST of CX043299 vs. ExPASy Swiss-Prot
Match: LOX12_MOUSE (Arachidonate 12-lipoxygenase, 12S-type OS=Mus musculus GN=Alox12 PE=1 SV=4)

HSP 1 Score: 84.3445 bits (207), Expect = 9.121e-16
Identity = 71/222 (31.98%), Postives = 99/222 (44.59%), Query Frame = 2
Query:  170 WFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPG 835
            W  DE F  Q L G NP  +R  T  P +  L   +          E ++ ++      E+ +K   LF  D+  L       V + +   L     +  + P G L P+AI++ +PP    P    +FLPS        W LAK  V   D    +L  H L TH   E   +AT R L  +HPI++LL PH RYTMEIN  +R  L++  GI +   S G
Sbjct:  222 WQEDELFGYQFLNGANPMLLRRSTSLPSRLVLPSGM----------EELQAQL------EKELKNGSLFEADFI-LLDGIPANVIRGEPQYLAAPLVMLRMDPGGKLLPMAIQI-QPPNPSSPA-PTLFLPS---DPPLAWLLAKIWVRNSDFQLQELQFHLLNTHLVAEVIAVATMRCLPGLHPIFKLLVPHIRYTMEINTRSRTQLISDGGIFDQVVSTG 421          
BLAST of CX043299 vs. ExPASy Swiss-Prot
Match: LOX_PSEAE (Oleic acid lipoxygenase OS=Pseudomonas aeruginosa GN=lox PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.912e-15
Identity = 66/225 (29.33%), Postives = 108/225 (48.00%), Query Frame = 2
Query:  173 FRDEE-FSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDL--FLPYVEKVRQLKSTTL-YGSRTIFFL-TPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTEC-WLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFS 829
            FRD+E F+   +AG NP  IR +   P    L  E +             + +G   S+ EA   ++L++LDY +L    P     + L  T   Y    +F L      L P+AI+  + P    P + +   P+   ++  W W++AK  VL  +  YH++  H  +TH  +E + +AT R L+  HP++ LL PHF  T+ +N  A + L+ + G I+  F+
Sbjct:  228 FRDDEAFAYWRVAGPNPLLIRRVDALPANFPLGEEQF------------RRVMGADDSLLEAAASRRLYLLDYAELGKLAPSGAVDKLLTGTGFAYAPIALFALGKDRARLLPVAIQCGQDPAT-HPMFVR---PAESESDLYWGWQMAKTVVLVAEENYHEMFVHLAQTHLVSEAFCLATQRTLAPSHPLHVLLAPHFEGTLFVNEGAARILLPSAGFIDVMFA 436          
BLAST of CX043299 vs. ExPASy Swiss-Prot
Match: LOXA_PSEAE (Arachidonate 15-lipoxygenase OS=Pseudomonas aeruginosa GN=loxA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.246e-14
Identity = 66/225 (29.33%), Postives = 107/225 (47.56%), Query Frame = 2
Query:  173 FRDEE-FSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDL--FLPYVEKVRQLKSTTL-YGSRTIFFL-TPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTEC-WLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFS 829
            FRD+E F+   +AG NP  IR +   P    L  E +             + +G   S+ EA   ++L++LDY +L    P     + L  T   Y    +F L      L P+AI+  + P    P + +   P+   ++  W W++AK  V   +  YH++  H  +TH  +E + +AT R L+  HP++ LL PHF  T+ IN  A + L+ + G I+  F+
Sbjct:  228 FRDDEAFAYWRVAGPNPLLIRRVDALPANFPLGEEQF------------RRVMGADDSLLEAAASRRLYLLDYAELGKLAPSGAVDKLLTGTGFAYAPIALFALGKDRARLLPVAIQCGQDPAT-HPMFVR---PAESESDLYWGWQMAKTVVQVAEENYHEMFVHLAQTHLVSEAFCLATQRTLAPSHPLHVLLAPHFEGTLFINEGAARILLPSAGFIDVMFA 436          
The following BLAST results are available for this feature:
BLAST of CX043299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX15_HUMAN2.835e-1732.48Arachidonate 15-lipoxygenase OS=Homo sapiens GN=AL... [more]
LX12L_MOUSE1.407e-1630.43Arachidonate 12-lipoxygenase, leukocyte-type OS=Mu... [more]
LOX12_HUMAN1.407e-1631.98Arachidonate 12-lipoxygenase, 12S-type OS=Homo sap... [more]
LX12L_RAT2.400e-1630.00Arachidonate 12-lipoxygenase, leukocyte-type OS=Ra... [more]
LOX12_MOUSE9.121e-1631.98Arachidonate 12-lipoxygenase, 12S-type OS=Mus musc... [more]
LOX_PSEAE5.912e-1529.33Oleic acid lipoxygenase OS=Pseudomonas aeruginosa ... [more]
LOXA_PSEAE2.246e-1429.33Arachidonate 15-lipoxygenase OS=Pseudomonas aerugi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10B07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B07-D14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043299 ID=CX043299; Name=CX043299; organism=Citrus sinensis; type=EST; length=847bp
CTTCTCTGCTATTGACGCACTCTTCAATGAAGGAGTCAACTTGCCTCCAC
TCAAACAGGAAGGTTTTTGGAACACACTGCTTCCCAGATTGGTTAAGGCA
ATTGAGGATACAGGAGATAATATTTTGCTGTTTGAGACGCCAGAAACAAT
GGACAGAGACAAATTCTTTTGGTTTAGGGATGAGGAATTTTCTAGGCAAA
CTCTCGCTGGTCTCAACCCGTATAGCATAAGGTTGATCACGGAATGGCCG
TTGAAAAGCACACTCGATCCTGAAATTTACGGACCACCAGAATCAGCAAT
TACCACAGAATTGATTGAAAAAGAAATTGGAGGAATGATTTCTGTTGAAG
AGGCTATAAAACAAAAGAAGTTGTTCATCTTAGATTACCATGACCTATTT
TTACCATATGTGGAAAAAGTGAGACAACTCAAAAGCACAACGTTGTATGG
ATCTCGCACAATTTTCTTCCTAACACCAGCCGGCACATTGAGACCAATAG
CTATTGAGCTCACTCGGCCTCCAATGAATGGCAAGCCACAATGGAAACAA
GTGTTTTTACCTTCTTGGCACTCTACTGAGTGCTGGCTTTGGAAGCTAGC
CAAAGCTCATGTCCTTGCTCATGATGCTGGCTATCACCAGCTTGTCAGCC
ATTGGTTAAGAACTCATTGTTGCACAGAACCTTACGTAATAGCAACCAAT
CGGCAACTCAGCGTGATGCATCCAATCTATAGATTGTTGGATCCTCATTT
TCGATACACAATGGAGATCAATGGTTTGGCTCGACAAGCTCTTGTTAATG
CTGATGGAATCATTGAAAGCTCATTCTCACCTGGAAAGTACTCTATG
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