EH668992

Overview
NameEH668992
Unique NameEH668992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length139
Libraries
Library NameType
Citrus apomitic embryos (subtractive cDNA library)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_CYAA5 (NAD(P)H-quinone oxidoreductase subunit K OS=Cyanothece sp. (strain ATCC 51142) GN=ndhK PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.790e-15
Identity = 36/40 (90.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADLI+TAGT
Sbjct:   61 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGT 100          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK1_SYNY3 (NAD(P)H-quinone oxidoreductase subunit K 1 OS=Synechocystis sp. (strain PCC 6803) GN=ndhK1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.790e-15
Identity = 36/40 (90.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADLI+TAGT
Sbjct:   60 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGT 99          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_NOSP7 (NAD(P)H-quinone oxidoreductase subunit K OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhK PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.950e-15
Identity = 35/40 (87.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GL+PRSSPRQADLI+TAGT
Sbjct:   56 TACCFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGT 95          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_ANAVT (NAD(P)H-quinone oxidoreductase subunit K OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhK PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.950e-15
Identity = 35/40 (87.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GL+PRSSPRQADLI+TAGT
Sbjct:   56 TACCFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGT 95          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_ANASP (NAD(P)H-quinone oxidoreductase subunit K OS=Anabaena sp. (strain PCC 7120) GN=ndhK PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.950e-15
Identity = 35/40 (87.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GL+PRSSPRQADLI+TAGT
Sbjct:   56 TACCFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGT 95          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK1_GLOVI (NAD(P)H-quinone oxidoreductase subunit K 1 OS=Gloeobacter violaceus GN=ndhK1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.950e-15
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFA LIGSRFDFDR+GLVPR+SPRQADLI+TAGT
Sbjct:   47 TSCCFIEFAGLIGSRFDFDRFGLVPRASPRQADLIITAGT 86          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_TRIEI (NAD(P)H-quinone oxidoreductase subunit K OS=Trichodesmium erythraeum (strain IMS101) GN=ndhK PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.465e-15
Identity = 35/40 (87.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADL++TAGT
Sbjct:   53 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLITAGT 92          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK2_GLOVI (NAD(P)H-quinone oxidoreductase subunit K 2 OS=Gloeobacter violaceus GN=ndhK2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.103e-14
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA LIGSRFDFDR+GLVPR+SPRQADLI+TAGT
Sbjct:   52 TACCFIEFAGLIGSRFDFDRFGLVPRASPRQADLIITAGT 91          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SYNP2 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhK PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.440e-14
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+L+GSRFDFDR+GLVPRSSPRQADLIL AGT
Sbjct:   57 TACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLILVAGT 96          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PAUCH (NAD(P)H-quinone oxidoreductase subunit K, organellar chromatophore OS=Paulinella chromatophora GN=ndhK PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.440e-14
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADLI+ AGT
Sbjct:   56 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIIVAGT 95          
The following BLAST results are available for this feature:
BLAST of EH668992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
NDHK_CYAA53.790e-1590.00NAD(P)H-quinone oxidoreductase subunit K OS=Cyanot... [more]
NDHK1_SYNY33.790e-1590.00NAD(P)H-quinone oxidoreductase subunit K 1 OS=Syne... [more]
NDHK_NOSP74.950e-1587.50NAD(P)H-quinone oxidoreductase subunit K OS=Nostoc... [more]
NDHK_ANAVT4.950e-1587.50NAD(P)H-quinone oxidoreductase subunit K OS=Anabae... [more]
NDHK_ANASP4.950e-1587.50NAD(P)H-quinone oxidoreductase subunit K OS=Anabae... [more]
NDHK1_GLOVI4.950e-1590.00NAD(P)H-quinone oxidoreductase subunit K 1 OS=Gloe... [more]
NDHK_TRIEI6.465e-1587.50NAD(P)H-quinone oxidoreductase subunit K OS=Tricho... [more]
NDHK2_GLOVI1.103e-1487.50NAD(P)H-quinone oxidoreductase subunit K 2 OS=Gloe... [more]
NDHK_SYNP21.440e-1487.50NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_PAUCH1.440e-1487.50NAD(P)H-quinone oxidoreductase subunit K, organell... [more]

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Properties
Property NameValue
Genbank descriptionapomitic19 Citrus apomitic embryos (subtractive cDNA library) Citrus sinensis cDNA clone apomitic19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH668992 ID=EH668992; Name=EH668992; organism=Citrus sinensis; type=EST; length=139bp
ACCAGTTGTTGTTTCATTGAATTTGCTTCATTAATCGGCTCGCGGTTCGA
TTTTGACCGTTATGGGCTGGTACCAAGATCGAGCCCTAGACAGGCGGACC
TAATTTTAACAGCTGGTACCTGCCCGGGCGGCCGCTCGA
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