EH668992

Overview
NameEH668992
Unique NameEH668992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length139
Libraries
Library NameType
Citrus apomitic embryos (subtractive cDNA library)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_MESVI (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Mesostigma viride GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.881e-14
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFA L+GSRFDFDR+GLVPR SPRQADLI+TAGT
Sbjct:   62 TSCCFIEFACLLGSRFDFDRFGLVPRCSPRQADLIITAGT 101          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SYNR3 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain RCC307) GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   57 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGT 96          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SYNP6 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPR SPRQADL++TAGT
Sbjct:   50 TACCFIEFAALIGSRFDFDRFGLVPRCSPRQADLLITAGT 89          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SYNE7 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus elongatus (strain PCC 7942) GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPR SPRQADL++TAGT
Sbjct:   50 TACCFIEFAALIGSRFDFDRFGLVPRCSPRQADLLITAGT 89          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PROMT (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain NATL2A) GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   63 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGT 102          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PROMS (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain AS9601) GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   58 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGT 97          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PROMP (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   58 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGT 97          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PROMM (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   58 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGT 97          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PROMA (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   58 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGT 97          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PROM9 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9312) GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   58 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGT 97          
The following BLAST results are available for this feature:
BLAST of EH668992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
NDHK_MESVI1.881e-1487.50NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_SYNR32.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_SYNP62.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_SYNE72.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_PROMT2.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROMS2.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROMP2.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROMM2.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROMA2.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM92.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionapomitic19 Citrus apomitic embryos (subtractive cDNA library) Citrus sinensis cDNA clone apomitic19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH668992 ID=EH668992; Name=EH668992; organism=Citrus sinensis; type=EST; length=139bp
ACCAGTTGTTGTTTCATTGAATTTGCTTCATTAATCGGCTCGCGGTTCGA
TTTTGACCGTTATGGGCTGGTACCAAGATCGAGCCCTAGACAGGCGGACC
TAATTTTAACAGCTGGTACCTGCCCGGGCGGCCGCTCGA
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