EH668992

Overview
NameEH668992
Unique NameEH668992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length139
Libraries
Library NameType
Citrus apomitic embryos (subtractive cDNA library)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PROM5 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9515) GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   58 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGT 97          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PROM4 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9211) GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   71 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGT 110          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PROM3 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9303) GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   58 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGT 97          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PROM2 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9215) GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   58 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGT 97          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PROM1 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain NATL1A) GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   63 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGT 102          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PROM0 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9301) GN=ndhK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.457e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+LIGSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   58 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGT 97          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_THEEB (NAD(P)H-quinone oxidoreductase subunit K OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhK PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.209e-14
Identity = 33/40 (82.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA++IGSRFDFDR+GLVPR+SPRQADLI+T+GT
Sbjct:   50 TACCFIEFAAMIGSRFDFDRFGLVPRNSPRQADLIITSGT 89          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK1_ACAM1 (NAD(P)H-quinone oxidoreductase subunit K 1 OS=Acaryochloris marina (strain MBIC 11017) GN=ndhK1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.209e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIE A++IGSRFDFDR+GLVPRSSPRQADLI+TAGT
Sbjct:   47 TACCFIEIAAMIGSRFDFDRFGLVPRSSPRQADLIITAGT 86          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SYNSC (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain CC9605) GN=ndhK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.191e-14
Identity = 33/40 (82.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+L+GSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   60 TACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGT 99          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SYNS9 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain CC9902) GN=ndhK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.191e-14
Identity = 33/40 (82.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+L+GSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   58 TACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGT 97          
The following BLAST results are available for this feature:
BLAST of EH668992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
NDHK_PROM52.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM42.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM32.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM22.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM12.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM02.457e-1485.00NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_THEEB3.209e-1482.50NAD(P)H-quinone oxidoreductase subunit K OS=Thermo... [more]
NDHK1_ACAM13.209e-1485.00NAD(P)H-quinone oxidoreductase subunit K 1 OS=Acar... [more]
NDHK_SYNSC4.191e-1482.50NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_SYNS94.191e-1482.50NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionapomitic19 Citrus apomitic embryos (subtractive cDNA library) Citrus sinensis cDNA clone apomitic19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH668992 ID=EH668992; Name=EH668992; organism=Citrus sinensis; type=EST; length=139bp
ACCAGTTGTTGTTTCATTGAATTTGCTTCATTAATCGGCTCGCGGTTCGA
TTTTGACCGTTATGGGCTGGTACCAAGATCGAGCCCTAGACAGGCGGACC
TAATTTTAACAGCTGGTACCTGCCCGGGCGGCCGCTCGA
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