EY665520 | Citrus Genome Database

Overview


Name	EY665520
Unique Name	EY665520
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	885

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALL3_RAT (Calmodulin-like protein 3 OS=Rattus norvegicus GN=Calml3 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 4.643e-12
Identity = 22/54 (40.74%), Postives = 33/54 (61.11%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +M+NE+  D +GT+  PE+L ++   M D  S +E+  AF
Sbjct:   37 MRSLGQNPTEAELQDMVNEIDKDGNGTVDFPEFLTMMSRKMKDTDSEEEIREAF 90

HSP 2 Score: 33.4982 bits (75), Expect = 4.643e-12
Identity = 17/52 (32.69%), Postives = 25/52 (48.08%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E + A D   D  + Y+E  H+L+
Sbjct:   96 DGNGFVSAAELRHVMTRLGEKLSDEEVDEMIQAADTDGDGQVNYEEFVHMLV 147

HSP 3 Score: 30.4166 bits (67), Expect = 4.643e-12
Identity = 14/23 (60.87%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TT+EL  V
Sbjct:   14 KEAFSLFDKDGDGCITTQELGTV 36

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM_WHEAT (Calmodulin OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 50.0618 bits (118), Expect = 6.002e-12
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 6.002e-12
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 29.261 bits (64), Expect = 6.002e-12
Identity = 16/52 (30.77%), Postives = 23/52 (44.23%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y+E   V++
Sbjct:   96 DQDGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM_STYLE (Calmodulin OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 50.0618 bits (118), Expect = 6.002e-12
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAFPCY 246
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  + +EL  AF  +
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELVEAFKVF 93

HSP 2 Score: 33.113 bits (74), Expect = 6.002e-12
Identity = 17/52 (32.69%), Postives = 25/52 (48.08%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  GL S+ E+   +T L EKL      E +   D   D HI Y+E   +++
Sbjct:   96 DGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGHINYEEFVRMMM 147

HSP 3 Score: 28.1054 bits (61), Expect = 6.002e-12
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D  +TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTV 36

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM_CAPAN (Calmodulin OS=Capsicum annuum GN=CCM1 PE=2 SV=3)

HSP 1 Score: 50.0618 bits (118), Expect = 6.002e-12
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 6.002e-12
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 29.261 bits (64), Expect = 6.002e-12
Identity = 16/52 (30.77%), Postives = 22/52 (42.31%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y E   V++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVMM 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM5_SOLTU (Calmodulin-5/6/7/8 OS=Solanum tuberosum GN=PCM5 PE=1 SV=3)

HSP 1 Score: 50.0618 bits (118), Expect = 6.002e-12
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 6.002e-12
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 29.261 bits (64), Expect = 6.002e-12
Identity = 16/52 (30.77%), Postives = 22/52 (42.31%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y E   V++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVMM 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM3_ORYSI (Calmodulin-3 OS=Oryza sativa subsp. indica GN=CAM3 PE=2 SV=2)

HSP 1 Score: 50.0618 bits (118), Expect = 6.002e-12
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 6.002e-12
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 29.261 bits (64), Expect = 6.002e-12
Identity = 16/52 (30.77%), Postives = 22/52 (42.31%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y E   V++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVMM 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM_TETPY (Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4)

HSP 1 Score: 49.6766 bits (117), Expect = 1.003e-11
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAFPCY 246
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  + +EL  AF  +
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVF 93

HSP 2 Score: 32.7278 bits (73), Expect = 1.003e-11
Identity = 17/52 (32.69%), Postives = 25/52 (48.08%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  GL S+ E+   +T L EKL      E +   D   D HI Y+E   +++
Sbjct:   96 DGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMMM 147

HSP 3 Score: 28.1054 bits (61), Expect = 1.003e-11
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D  +TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTV 36

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM_MAIZE (Calmodulin OS=Zea mays GN=CALM1 PE=2 SV=2)

HSP 1 Score: 48.521 bits (114), Expect = 1.003e-11
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPELLNLMARKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 1.003e-11
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 30.0314 bits (66), Expect = 1.003e-11
Identity = 16/52 (30.77%), Postives = 23/52 (44.23%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y+E   V++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM_SOLLC (Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 SV=2)

HSP 1 Score: 48.9062 bits (115), Expect = 1.296e-11
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAFPCY 246
            M  LG  PTE +L +MI+E+ AD +GT+  PE+L L+   M D  S +EL  AF  +
Sbjct:   37 MRSLGQNPTEAELQDMISEVDADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVF 93

HSP 2 Score: 31.9574 bits (71), Expect = 1.296e-11
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 29.261 bits (64), Expect = 1.296e-11
Identity = 15/52 (28.85%), Postives = 23/52 (44.23%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  + Y+E   ++L
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVRMML 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM_MALDO (Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2)

HSP 1 Score: 47.7506 bits (112), Expect = 1.676e-11
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEPLNLMARKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 1.676e-11
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 30.0314 bits (66), Expect = 1.676e-11
Identity = 16/52 (30.77%), Postives = 23/52 (44.23%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y+E   V++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147

The following BLAST results are available for this feature:

BLAST of EY665520 vs. ExPASy Swiss-Prot

BLAST of EY665520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35


Match Name	E-value	Identity	Description
CALL3_RAT	4.643e-12	40.74	Calmodulin-like protein 3 OS=Rattus norvegicus GN=...	[more]
CALM_WHEAT	6.002e-12	48.15	Calmodulin OS=Triticum aestivum PE=1 SV=3	[more]
CALM_STYLE	6.002e-12	43.86	Calmodulin OS=Stylonychia lemnae PE=3 SV=2	[more]
CALM_CAPAN	6.002e-12	48.15	Calmodulin OS=Capsicum annuum GN=CCM1 PE=2 SV=3	[more]
CALM5_SOLTU	6.002e-12	48.15	Calmodulin-5/6/7/8 OS=Solanum tuberosum GN=PCM5 PE...	[more]
CALM3_ORYSI	6.002e-12	48.15	Calmodulin-3 OS=Oryza sativa subsp. indica GN=CAM3...	[more]
CALM_TETPY	1.003e-11	43.86	Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4	[more]
CALM_MAIZE	1.003e-11	48.15	Calmodulin OS=Zea mays GN=CALM1 PE=2 SV=2	[more]
CALM_SOLLC	1.296e-11	43.86	Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 S...	[more]
CALM_MALDO	1.676e-11	48.15	Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-102-001-C03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY665520 ID=EY665520; Name=EY665520; organism=Citrus sinensis; type=EST; length=885bp
CCACGCGTCCGGCCTTCAGCTTGTTTGACTGTGATGTGGACAGATGCCTT
ACCACCAAGGAGCTTGTTGCTGTCTATGACGCCCCTGGGGCTTACCCCCA
CTGAGGGTGACCTCCACAACATGATCAATGAACTGTATGCTGATGACCAT
GGAACTCTTCATGTTCCTGAATACCTTATCCTCTTGGACCCGAACATGCT
TGATTGCCACTCTTGGGACGAGCTTACCTATGCCTTCCCCTGTTATCTGA
CATGACTTGAGAGGTCTCTTCTCATCTACTGAGATGCTCCAAGATATCAC
AATTCTATCAGAGAAGCTTCATCGCTCCTCAACTTATGAGACTCTCTTCG
CTCCTGATGCTTATGCTGATGCTCACATAACTTATCAGGAACTTGCCCAC
GTCCTTCTGCACCATGCATGCCCTCAACCCTCCTGTACTCACTGATGCGC
TGATCTCTGTATCAAGGTCTTCCTACGTCTCCCACATGCCATCAATATTA
TACTATCCATGAGGCTCTAGCTGACTGTCTGGATGGCCTCCTAATGATGA
TTGCACCGATCGTCCATATAAGAAAGCCTCTCTCTCGGCCATATGCCTGT
TGACTGGAAAAACTCCTCCTGCTTTATCAAAGTGCAAACACCTGCCACCA
TTAGATTGTGCGTGTCAGTATAGTAATCAGGAAAGTGGCCAGAGCAATGG
GGAGGTTGGCCATGCTCAGAGGGAAGAACTCCCGTACAACAGGGTCCCGG
GGAGAGAATACCCCCGAAATCGGGAATCCTCGGAACCTAGAGGTTTTAGG
GGTAGGATAGAGGGCGTAGGTTGGGGGGGTTCGGGGTAGAAGCTCGGGGG
GAGCTCGGCGGGCGTGCTTTCTCTCCTCGGAAACC