EY665513

Overview
NameEY665513
Unique NameEY665513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665513 vs. ExPASy Swiss-Prot
Match: UBR5_RAT (E3 ubiquitin-protein ligase UBR5 (Fragment) OS=Rattus norvegicus GN=Ubr5 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 52/173 (30.06%), Postives = 86/173 (49.71%), Query Frame = 1
Query:  202 DKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWML-------ENDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPPINAFLEGFTELIP 699
            D  A LF   G    + P P    +   L+ F+ +GR++G  L   +L  +   R   K +LG KV +HD    DP  +++L+ ++        + +   +DL F++D  +E+       QV   ELIP G NI VT +N ++YV   AEHR+      P++A  +G  +++P
Sbjct:  620 DDNAPLFYQPGKRGFYTPRPGKNTEAR-LNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEE----GGGQV---ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLP 784          
BLAST of EY665513 vs. ExPASy Swiss-Prot
Match: HERC6_HUMAN (Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.549e-15
Identity = 61/238 (25.63%), Postives = 113/238 (47.48%), Query Frame = 1
Query:   34 ISVRRAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIF--DKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWMLEN---DISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPPINAFLEGFTELIPGELISIFHDQE 732
            + VRR+ +++D+  QL      D    L V F  E   ++GG++ E++  +   +   + G  ++  +G+   F   P    + E   YF F G + G +LF+  + ++ F  + YK +L  K +  D++ + P   K+L+ +L++   DI D L + FSI  D+            D +LIP G +I V + NK  YV    ++    +++     F  GF  +   E++  F+ +E
Sbjct:  674 LRVRRSRLVKDALRQLSQAEATDFCKVLVVEFINEICPESGGVSSEFFHCMFEEMTKPEYGMFMYPEMGSCMWFPAKP----KPEKKRYFLF-GMLCGLSLFNLNVANLPFPLALYKKLLDQKPSLEDLKELSPRLGKSLQEVLDDAADDIGDALCIRFSIHWDQN-----------DVDLIPNGISIPVDQTNKRDYVSKYIDYIFNVSVKAVYEEFQRGFYRVCEKEILRHFYPEE 895          
BLAST of EY665513 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.491e-13
Identity = 69/260 (26.54%), Postives = 113/260 (43.46%), Query Frame = 1
Query:   46 RAYILEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAG-GLTREWYQLLSRV---------------IFDKGALLFTTVGNESTFQPNPNSVYQT--EHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNL---------KWMLENDISD----VLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPPINAFLEGFTELIPGELISIFHDQE 732
            R  ILE +   + +   Q    ++ +  +  E +  G G T E+Y L+SR                I  K       + + S   P P S   T  + L  F  +G VV KAL DG++LD+  +++FYK ILG +++  DI  +DP+  K L         K +      D      DL+F     E+  + +     TDY+L P   N  V  +N  +Y+  +    +   I+  + AF  GF ++   E + IF+++E
Sbjct: 1119 RENILESAAKMMELYGNQ----KVVIEVEYSEEVGTGLGPTLEFYTLVSRAFQNPDLGMWRNDCSFIVGKPVEHSGVLASSSGLFPRPWSGTSTTSDVLQKFVLLGTVVAKALQDGRVLDLPLSKAFYKLILGQELSSFDIHFVDPELCKTLVELQALVRRKKLFAEAHGDSGAAKCDLSFHGTKIEDLCLEFALPGYTDYDLAPYSANDMVNLDNLEEYIKGIVNATVCNGIQKQVEAFRSGFNQVFSIEHLRIFNEEE 1374          
BLAST of EY665513 vs. ExPASy Swiss-Prot
Match: HYD_DROME (E3 ubiquitin-protein ligase hyd OS=Drosophila melanogaster GN=hyd PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.948e-13
Identity = 47/173 (27.17%), Postives = 84/173 (48.55%), Query Frame = 1
Query:  202 DKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWMLEN-------DISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPPINAFLEGFTELIP 699
            D    LF + G    + P        E ++ F+ +GR++G  L   +LL +   R   K+ILG K+ +HD+   DP  +++ + +++N       +  + ++L F ID       L +     + ELIPGGR++ VT  N  +YV    E+RL  +    + A  +G  +++P
Sbjct: 2585 DDNEPLFYSPGKRGFYTPRQGFA-SFERINAFRNIGRLIGLCLLQNELLPLFLQRHVLKYILGRKIKFHDLAFFDPALYESFRQIIQNAQTKEGEETINRMELCFVID-------LMKEEGCGNRELIPGGRDVAVTSSNIFEYVRRYTEYRLIKSQEKALEALKDGVFDVLP 2749          
BLAST of EY665513 vs. ExPASy Swiss-Prot
Match: HERC1_HUMAN (Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11
Identity = 65/212 (30.66%), Postives = 101/212 (47.64%), Query Frame = 1
Query:  121 VHFQGEEGIDAGGL----TREWYQLLSRVIFDKGALLFTT------VG-NESTFQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWMLENDISDVLDLTF--SIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPPINAFLEGFTELIPGELISI 717
            V   GE   DAGG+      E  Q L   I D   LL  +      VG N   F  NP++    EHL  FKF+G ++G A+   + LD+H     +K +  V +T  D+E +D  Y + L  +L  + S + + +F   I  D     + + A      +IPGG +I +T  N+ +YV+   E+RL    R  + A  EG + ++P  L+S+
Sbjct: 4514 VKLVGEGADDAGGVFDDTITEMCQELETGIVD---LLIPSPNATAEVGYNRDRFLFNPSACLD-EHLMQFKFLGILMGVAIRTKKPLDLHLAPLVWKQLCCVPLTLEDLEEVDLLYVQTLNSILHIEDSGITEESFHEMIPLDS---FVGQSADGKMVPIIPGGNSIPLTFSNRKEYVERAIEYRLHEMDR-QVAAVREGMSWIVPVPLLSL 4717          
The following BLAST results are available for this feature:
BLAST of EY665513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBR5_RAT9.340e-1630.06E3 ubiquitin-protein ligase UBR5 (Fragment) OS=Rat... [more]
HERC6_HUMAN3.549e-1525.63Probable E3 ubiquitin-protein ligase HERC6 OS=Homo... [more]
UPL4_ARATH1.491e-1326.54E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
HYD_DROME1.948e-1327.17E3 ubiquitin-protein ligase hyd OS=Drosophila mela... [more]
HERC1_HUMAN6.927e-1130.66Probable E3 ubiquitin-protein ligase HERC1 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-001-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665513 ID=EY665513; Name=EY665513; organism=Citrus sinensis; type=EST; length=859bp
CATCAACATGATCACCACCACAGTCCTTTGAGAATATCTGTAAGAAGAGC
TTACATTCTTGAAGATTCATACAACCAACTGCGCATGCGATCAACGCAAG
ATTTGAAGGGAAGGTTGACTGTTCACTTTCAAGGAGAGGAAGGCATTGAT
GCCGGTGGCCTTACAAGGGAGTGGTACCAATTGCTGTCAAGGGTTATTTT
TGACAAGGGAGCCCTACTTTTCACAACAGTGGGCAATGAATCAACATTCC
AACCCAACCCCAACTCTGTTTACCAAACTGAACATCTTTCATATTTCAAG
TTTGTTGGGCGAGTTGTTGGAAAAGCTCTTTTTGATGGGCAACTGTTGGA
TGTCCATTTTACTCGATCTTTCTACAAGCACATCCTGGGGGTTAAAGTTA
CTTATCATGACATTGAAGCTATTGATCCGGATTACTTCAAAAACCTGAAG
TGGATGCTTGAGAATGACATCAGTGATGTTCTTGACCTCACTTTTAGTAT
TGATGCTGATGAGGAGAAGCTGATTTTGTATGAAAGGGCGCAGGTAACCG
ACTATGAGCTAATTCCTGGTGGACGGAATATTAAAGTTACTGAGGAGAAT
AAGCACCAGTATGTGGATTTAGTCGCGGAGCATCGTTTGACGACTGCTAT
TCGGCCTCCAATAAATGCTTTTCTGGAGGGATTTACCGAACTAATTCCTG
GGGAGTTGATATCTATCTTCCATGACCAGGAATTATAATTATTGATTAGT
GGGCTTTCCGGATATTGAATCTGGATGAAATGAGGGCAAATACCGGAATA
TTCTGGATATAGTGCTGGCTCTCCTGGTTATCCAAGTGTTTTGGGAGGTT
GGTCACGGG
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