EY665504

Overview
NameEY665504
Unique NameEY665504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY665504 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 1.224e-12
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 3 
Query:  243 TPNLHIATVGSIAFYGIWNDFSGFIIPRTTIPIWGRWNYWANPIAWTLHGLAASPFGDIDYPRLESGD 446
            TPN+H+A     +F+ + N F+GF+IP+  IP W  W Y+ +P +W L GL +S +GD+D   L  G+
Sbjct: 1284 TPNIHMAVTLRSSFFSMLNLFAGFVIPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVDKEILVFGE 1351

HSP 2 Score: 26.5646 bits (57), Expect = 1.224e-12
Identity = 13/63 (20.63%), Postives = 26/63 (41.27%), Query Frame = 2 
Query:   53 WRMRSHKF*LRSPHVFVQAVVYGVIVYAMIRFEWTAVKFIWYIXXXXXXXXXXXXYGMMCVAM 241
            W     +  +  P+  +Q+++  +IVY  I +  +  K  W +             GM+ VA+
Sbjct: 1221 WAYSFSQVLIEVPYSLLQSLLCTIIVYPTIGYHMSVYKMFWSLYSIFCSLLIFNYSGMLMVAL 1283
The following BLAST results are available for this feature:
BLAST of EY665504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AB30G_ARATH1.224e-1241.18ABC transporter G family member 30 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-001-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665504 ID=EY665504; Name=EY665504; organism=Citrus sinensis; type=EST; length=836bp
CGGACGCGTGGGGCCTTCTACAGAGAAAAAGCTGCTGGAATGTATTCATC
TATGGCGTATGCGTTCGCACAAGTTCTAATTGAGAAGTCCCCATGTATTT
GTTCAAGCTGTAGTTTATGGTGTTATAGTCTATGCCATGATCCGATTTGA
ATGGACTGCTGTAAAGTTCATTTGGTATATATTCTTCATGTTCTGGAGCT
TTTTGCTCTTCACCTTCTATGGCATGATGTGTGTTGCTATGGACGCCAAA
CCTACATATTGCAACCGTTGGTTCAATTGCATTTTATGGAATATGGAACG
ACTTTTCGGGGTTTATTATCCCGAGAACAACGATTCCAATATGGGGGAGA
TGGAACTACTGGGCAAACCCTATAGCTTGGACATTGCATGGATTGGCTGC
ATCACCCTTTGGAGATATAGACTACCCAAGACTTGAGTCAGGTGACACAC
TGAAACCGGTTTTGACAACTTTATTTTGGTCTTAAACATGGATTTTCTAA
GAGTCACTGCCGGGTGGTGCTGGTGCGATTCACAGTGCTCGTTCACGTTT
GACCTTTGCCTCTTGGAAAATAAACGCATTCCGATTTCCGGGAGAACCCA
ATCGAAGGTTAATTATGGTCGTTGAACCAGAACGGCTTTGAAATGTAGTG
AGACAAAATTGGACACTGGCGAATATGGTAATATAGTTGGAGACGGAGGG
CCAAACATATTACGTGGTATGCAGATAGGGAGGATGTACAAAAGAACATT
GCACCGCACAACTAACCCAGAGCATAGGACGACCCTGTCGCCTACAGCGT
CGCCTGCTTTACAGGCCCCGTGCGCGAAATAAAACT
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