CX674330

Overview
NameCX674330
Unique NameCX674330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX674330_ssr23 microsatellite CX674330_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 6.083e-19
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = -2
Query:  527 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 736
            SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:  116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 6.083e-19
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = -2
Query:  527 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 736
            SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:  116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.083e-19
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = -2
Query:  527 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 736
            SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:  116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.083e-19
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = -2
Query:  527 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 736
            SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:  116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SRR55_DROME (Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 3.233e-12
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = -2
Query:  536 RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 748
            R+G    +EYR+IV  L S  SWQDLKD+MR+AG+V +A+  +      GVV++ +  DMK AI KLDDTE
Sbjct:  111 RYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNE-GVVEFASLSDMKTAIEKLDDTE 180          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFRS4_MOUSE (Splicing factor, arginine/serine-rich 4 OS=Mus musculus GN=Sfrs4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = -2
Query:  536 RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 748
            ++G    +EYR+IV  L S  SWQDLKD+MR+AG+V +A+  +  +   GV+++ +  DMK A+ KLD TE
Sbjct:   95 KYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE-GVIEFVSYSDMKRALEKLDGTE 164          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFRS4_HUMAN (Splicing factor, arginine/serine-rich 4 OS=Homo sapiens GN=SFRS4 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = -2
Query:  536 RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 748
            ++G    +EYR+IV  L S  SWQDLKD+MR+AG+V +A+  +  +   GV+++ +  DMK A+ KLD TE
Sbjct:   95 KYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE-GVIEFVSYSDMKRALEKLDGTE 164          
The following BLAST results are available for this feature:
BLAST of CX674330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SFRS1_PIG6.083e-1967.14Splicing factor, arginine/serine-rich 1 OS=Sus scr... [more]
SFRS1_MOUSE6.083e-1967.14Splicing factor, arginine/serine-rich 1 OS=Mus mus... [more]
SFRS1_HUMAN6.083e-1967.14Splicing factor, arginine/serine-rich 1 OS=Homo sa... [more]
SFRS1_BOVIN6.083e-1967.14Splicing factor, arginine/serine-rich 1 OS=Bos tau... [more]
SRR55_DROME3.233e-1250.70Serine-arginine protein 55 OS=Drosophila melanogas... [more]
SFRS4_MOUSE7.963e-1145.07Splicing factor, arginine/serine-rich 4 OS=Mus mus... [more]
SFRS4_HUMAN7.963e-1145.07Splicing factor, arginine/serine-rich 4 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_5G09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5G09-M17-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674330 ID=CX674330; Name=CX674330; organism=Citrus sinensis; type=EST; length=794bp
TTTTTTTTTTTTTTTTTCACATTAATAATAATAATTATTAAAAAAAAAAA
GAAATGCGTCCAACCATTGATCTTGAAAATTCCTCCAATAAAATTAGATA
TTTAAAGTCTCAACAAATTTAAAAAGATAGGCACTACCAAGCCATAAAAG
CAAATAACTAGTCTTAGGTTTTTGCTAAAACATTTCCAAGTAAAAATTGT
CCACTCAAATATTGATTACTTGCCCTCAAACTCATCTAAGCAAACCAGGC
TATGAAAAGTTTGGACATCAGTTATAAAAATCAGCCACTTCCAGAACGCA
CCTTATCTGGTGATACTGACCGCGACCTTGATCTTGCCCTGGACGACTTG
ACAGGAGAAGCAAACATAGATCTTGACACTGATCTGGAAACAGAACGCTC
TAATGATTTACTTCTATTTCTTCGCACAATTCTGCTTCTGCTTCGGCTTC
TACTTCGGCTTCTACTGCGGCTTCTCGATGGACTACGATCGTATCTTTTC
ACCGTTATGCGCCCTCTTGCCCAAGGATTTCTAAATTCAGTGTCATCAAG
TTTCCGAATTGCATATTTCATGTCTTCAGGATTAGTATAATCAACGACCC
CATAAGTCCCCTCACTGTCACGGGAAACTTCAGCAAAACAAACATCGCCT
GCTTTTCGCATATGATCCTTTAAATCCTGCCAGGAAGCTGAAGAAGGAAG
TCCGCGCACAATAACTCGATATTCAGAATGGCGTGAGATGCCAAAACGAC
CAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCA
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