CX674329

Overview
NameCX674329
Unique NameCX674329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX674329 vs. ExPASy Swiss-Prot
Match: SLP1_CAEEL (Protein slp-1 OS=Caenorhabditis elegans GN=slp-1 PE=1 SV=4)

HSP 1 Score: 76.2554 bits (186), Expect = 2.128e-13
Identity = 69/261 (26.44%), Postives = 123/261 (47.13%), Query Frame = 3 
Query:   42 LKSIREQSQRDLVNILKNIRGKKCLVIDPKLS--GSLSLIVPTSTLKEYGIELRLLSAEPVQTDCAKVVYFVGPQFISMRFISSHVHD--DASKGLQREYFL---YFVPRRSVACEKILEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDASSQWHIAKAIHKL-------EFTFGLIP-NVRAKGKASVRVAEILNRMQTEEPVSLSDMNIP------EINTLVLIDREVDMVTPMCSQLTYEGLVDEV 761
            +KS  E S+  L ++L ++ G K +V D   S    ++L    S L  +G+                VV+F+ P  +S+  +  ++ +  + SK L + +F+   +FV R S+      E +    L ++ E PL  +P D + LS           ++GD +     A A+++L         +    P ++ AKGK +  VA+++ +++          N+       +IN +VLIDR +D +TPM SQLT+ GL+DE+
Sbjct:   22 IKSANEYSRNLLFSVLDSLDGNKTIVWDRDRSVMHRVNLFAGASVLAAHGVVANHSIETKKSASTPHVVFFLAPTMVSLDLLCDYIDNVRNDSKILYQVFFIPEAWFVVRESLKTRA--EGKYWERLESVKEIPLCWLPRDGECLSLSSPQIAARLLINGDWTHLHKCAVALNQLIDMCRGRSSSSNQRPMSIYAKGKWASDVAKMMGKIRNSAEADSMTKNLDPIEGLLKINRIVLIDRWMDPLTPMLSQLTFYGLLDEI 280
The following BLAST results are available for this feature:
BLAST of CX674329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SLP1_CAEEL2.128e-1326.44Protein slp-1 OS=Caenorhabditis elegans GN=slp-1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_5G08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5G08-M15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674329 ID=CX674329; Name=CX674329; organism=Citrus sinensis; type=EST; length=767bp
CAATGGCGCAAATTCCAAACTTGGATAACGCTCCTTTAAATCTTAAATCT
ATTAGAGAACAATCGCAGAGAGACCTCGTAAATATCCTAAAAAACATTCG
AGGAAAGAAGTGTTTGGTCATTGATCCGAAGCTCAGCGGTTCACTATCGT
TGATCGTCCCGACATCTACACTTAAGGAATATGGCATCGAATTGCGGCTT
CTTTCTGCTGAGCCAGTTCAGACTGATTGTGCCAAAGTGGTGTATTTTGT
TGGTCCACAGTTTATTTCGATGAGATTTATAAGTTCTCATGTTCACGATG
ATGCTTCTAAAGGACTTCAGAGAGAGTATTTTCTTTATTTTGTCCCTCGC
CGCTCTGTTGCTTGTGAGAAGATTCTTGAGGAGGAAAAAGTTCATAACTT
GATGACTATTGGGGAATACCCATTGTACATGGTTCCATTGGATGAGGATG
TTTTATCATTTGAACTTGATCTTGCTCATAAAGAATGGCAAGTTGATGGT
GATGCAAGTTCCCAATGGCACATTGCAAAAGCAATTCACAAGCTTGAGTT
TACTTTTGGATTAATACCAAATGTGAGAGCCAAGGGAAAAGCATCAGTAC
GTGTTGCAGAAATTCTGAACCGCATGCAGACAGAGGAACCAGTTTCCTTA
TCTGATATGAACATCCCAGAGATAAATACACTTGTCCTTATCGATAGAGA
GGTTGACATGGTTACTCCCATGTGTTCTCAATTAACATATGAAGGACTGG
TGGATGAGGTAAGCTGA
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