CX674313

Overview
NameCX674313
Unique NameCX674313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_EHRCR (Protein recA OS=Ehrlichia chaffeensis (strain Arkansas) GN=recA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.846e-35
Identity = 74/130 (56.92%), Postives = 98/130 (75.38%), Query Frame = 3
Query:  426 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            ++  AL  A+ QI  +FG+G+IM L +    + +  +STGS ALD ALG GG PKGR+VEI+GPE+SGKTTLALHVIAE+Q++GG C FIDAEHALD   A  +GV T +L+++QPD GEQAL +V+ L+
Sbjct:   10 ERQKALDSAISQIEKAFGRGAIMKLKQGAIEK-IDSISTGSIALDTALGIGGFPKGRIVEIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKLGVNTGDLIVSQPDTGEQALHIVEYLV 138          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_EHRCJ (Protein recA OS=Ehrlichia canis (strain Jake) GN=recA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.846e-35
Identity = 74/130 (56.92%), Postives = 98/130 (75.38%), Query Frame = 3
Query:  426 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            ++  AL  A+ QI  +FG+G+IM L +    + +  +STGS ALD ALG GG PKGR+VEI+GPE+SGKTTLALHVIAE+Q++GG C FIDAEHALD   A  +GV T +L+++QPD GEQAL +V+ L+
Sbjct:   10 ERQKALDNAISQIEKAFGRGAIMKLKQGAIEK-IDSISTGSIALDTALGIGGFPKGRIVEIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKLGVNTGDLIVSQPDTGEQALHIVEYLV 138          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_CORA7 (Protein recA OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=recA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.846e-35
Identity = 73/126 (57.94%), Postives = 92/126 (73.02%), Query Frame = 3
Query:  438 ALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            AL  A+  I   FGKG++M LG    P  +  +S+G+ A+DIALG GG P+GR+VEIYGPE+SGKTT+ALH IA AQ+ GG   FIDAEHALDP  A  +GV T+NLL++QPD GEQAL + D L+
Sbjct:   19 ALDAAMAMIEKDFGKGAVMRLGDDDRPP-IQAISSGNTAIDIALGVGGFPRGRIVEIYGPESSGKTTVALHAIASAQKTGGIAAFIDAEHALDPEYARLLGVDTDNLLVSQPDTGEQALEIADMLV 143          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_CAMLA (Protein recA OS=Campylobacter lari GN=recA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.846e-35
Identity = 72/128 (56.25%), Postives = 95/128 (74.22%), Query Frame = 3
Query:  429 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 812
            K  +L  AL  +  +FGKG+I+ LG     + +  + TGS  LD+ALG GG+PKGR++EIYGPE+SGKTTL LH+IAE Q++GG C FIDAEHALD   A+ +GV TENL ++QPD GEQAL +V+T+
Sbjct:    5 KRKSLDAALKSLDKTFGKGTILRLGDKEVEK-IDSIPTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVKYAKDLGVDTENLYISQPDFGEQALEIVETI 131          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_CAMHC (Protein recA OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=recA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.846e-35
Identity = 73/128 (57.03%), Postives = 94/128 (73.44%), Query Frame = 3
Query:  429 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 812
            K   L+ AL  I  +FGKG+++ LG     + +  +STGS  LDIALG GG+PKGR+VEIYGPE+SGKTTL LH+IAE Q++GG C F+DAEHALD   A  +GV  +NL ++QPD GEQAL +V+TL
Sbjct:    5 KKKMLESALKSIDKAFGKGTLVRLGDKEVEK-IDSISTGSVGLDIALGIGGVPKGRIVEIYGPESSGKTTLTLHIIAECQKKGGVCAFVDAEHALDVKYAANLGVDVDNLYVSQPDFGEQALDIVETL 131          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_ALTMD (Protein recA OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=recA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.846e-35
Identity = 79/135 (58.52%), Postives = 96/135 (71.11%), Query Frame = 3
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            ++N SK   AL  A+ QI   FGKG+IM LG +     +  +STGS  +DIALG GGLP GRVVEIYGPE+SGKTTL L VIAEAQ+ G  C F+DAEHALDP  AE +GV  + LL++QPD GEQAL + D L+
Sbjct:    2 DDNKSK---ALTAAVGQIEKQFGKGAIMRLGDNQA-MDIEAISTGSLTIDIALGIGGLPCGRVVEIYGPESSGKTTLTLQVIAEAQKNGKTCAFVDAEHALDPVYAEKLGVNIDELLVSQPDTGEQALEICDMLV 132          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_VIBPA (Protein recA OS=Vibrio parahaemolyticus GN=recA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.716e-35
Identity = 79/128 (61.72%), Postives = 92/128 (71.88%), Query Frame = 3
Query:  429 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 812
            K  AL  AL QI   FGKGSIM LG +     V  +STGS +LDIALG GGLP GR+VEIYGPE+SGKTTL L +IA AQR+G  C FIDAEHALDP  A+ +GV  + LL++QPD GEQAL + D L
Sbjct:    5 KQKALAAALGQIEKQFGKGSIMRLGDN-RAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDAL 131          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_TRIEI (Protein recA OS=Trichodesmium erythraeum (strain IMS101) GN=recA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.716e-35
Identity = 77/130 (59.23%), Postives = 94/130 (72.31%), Query Frame = 3
Query:  426 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            +K  AL   L  I  +FGKGSI+ LG   T   V  +S+G+  LD+ALG GGLPKGRV+EIYGPE+SGKTTLALH IAE Q+ GG   F+DAEHALDP+ A  +GV  ENLL++QPD GE AL +VD L+
Sbjct:    9 EKQKALDSVLKTIEKTFGKGSIVRLG-DATRMKVETISSGALTLDLALG-GGLPKGRVIEIYGPESSGKTTLALHAIAETQKSGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTGEMALEVVDHLV 136          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_PROMM (Protein recA OS=Prochlorococcus marinus (strain MIT 9313) GN=recA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.716e-35
Identity = 79/135 (58.52%), Postives = 95/135 (70.37%), Query Frame = 3
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            E    ++D AL   L QI  +FGKGSIM LG +   R V    TG+  LD+ALG GG PKGRVVE+YGPE+SGKTTL LH IAE QR+GG   F+DAEHALDP  A ++GV  ENLL++QPD GE AL +VD L+
Sbjct:   19 EPRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMR-VETFPTGALTLDLALG-GGYPKGRVVEVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLV 151          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_PROM3 (Protein recA OS=Prochlorococcus marinus (strain MIT 9303) GN=recA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.716e-35
Identity = 79/135 (58.52%), Postives = 95/135 (70.37%), Query Frame = 3
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            E    ++D AL   L QI  +FGKGSIM LG +   R V    TG+  LD+ALG GG PKGRVVE+YGPE+SGKTTL LH IAE QR+GG   F+DAEHALDP  A ++GV  ENLL++QPD GE AL +VD L+
Sbjct:   19 EPRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMR-VETFPTGALTLDLALG-GGYPKGRVVEVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLV 151          
The following BLAST results are available for this feature:
BLAST of CX674313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_EHRCR2.846e-3556.92Protein recA OS=Ehrlichia chaffeensis (strain Arka... [more]
RECA_EHRCJ2.846e-3556.92Protein recA OS=Ehrlichia canis (strain Jake) GN=r... [more]
RECA_CORA72.846e-3557.94Protein recA OS=Corynebacterium aurimucosum (strai... [more]
RECA_CAMLA2.846e-3556.25Protein recA OS=Campylobacter lari GN=recA PE=3 SV... [more]
RECA_CAMHC2.846e-3557.03Protein recA OS=Campylobacter hominis (strain ATCC... [more]
RECA_ALTMD2.846e-3558.52Protein recA OS=Alteromonas macleodii (strain DSM ... [more]
RECA_VIBPA3.716e-3561.72Protein recA OS=Vibrio parahaemolyticus GN=recA PE... [more]
RECA_TRIEI3.716e-3559.23Protein recA OS=Trichodesmium erythraeum (strain I... [more]
RECA_PROMM3.716e-3558.52Protein recA OS=Prochlorococcus marinus (strain MI... [more]
RECA_PROM33.716e-3558.52Protein recA OS=Prochlorococcus marinus (strain MI... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_5F09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5F09-K17-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674313 ID=CX674313; Name=CX674313; organism=Citrus sinensis; type=EST; length=816bp
GTCACATACAGTGTTTCTGTGTGGGAGTGGGGCACTTGAACCAGAGAAAA
TATTAAAATAGTTTCAGTAAAAAGGGACGGAACCCAAAAGTCCAAAACCC
CCAAAACCCTAAGAACATAAACAATAAACACACCACACGTTCAATACTTT
GGTATTAAATGGAATAAATTGTAGTTGTTCACCATTAATTTTTTTGTTGC
CATTTATTTTTGGTTAGTTTTGGTTTGTGAGTCTCCATGGCGAGGCTCCT
TCGAAACGCTTCTTTACTTAGACGCTGTCTTCTCTCAGTCTCACCACCAC
ACCCACATCCACAGAGCTTTAGGGGAGGGATGTTGGAAACTTCTACTCAG
ATTTGCAACTTTTCTTCCAAAAGTAAAAGAAAGTCTAAGTCTGATGGGAG
TGACTCTGGTGAAGAGAATATGTCCAAGAAAGATCTAGCCCTACAACAAG
CATTGGATCAGATTACTAGCTCATTTGGGAAAGGGTCTATTATGTGGCTT
GGTCGGTCTGTCACTCCCAGACATGTTCCCGTTGTGTCCACAGGTTCTTT
TGCACTTGATATAGCACTAGGAACTGGTGGACTTCCAAAGGGACGTGTTG
TTGAGATATATGGTCCTGAGGCTTCTGGGAAAACAACTCTTGCTCTACAT
GTAATTGCTGAAGCACAAAGACAAGGAGGTTACTGTGTTTTTATCGATGC
TGAGCATGCTCTTGATCCATCTCTAGCTGAGACTATTGGAGTAAAGACAG
AGAATTTGCTTCTTGCACAACCTGATTGTGGTGAACAGGCTCTCAGTCTT
GTGGATACGCTGATCC
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