CX674313

Overview
NameCX674313
Unique NameCX674313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_THISH (Protein recA OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=recA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.545e-40
Identity = 84/135 (62.22%), Postives = 99/135 (73.33%), Query Frame = 3
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            +EN  K   AL  AL QI   FGKG++M +G S   R V  +STGS ALDIALG GGLPKGRVVEIYGPE+SGKTTL L VIAE Q+QGG   F+DAEHALDP  AE +GV  ++LL++QPD GEQAL + D L+
Sbjct:    2 DENRKK---ALSAALGQIERQFGKGAVMRMGDSTAVRDVEAISTGSLALDIALGIGGLPKGRVVEIYGPESSGKTTLTLQVIAECQKQGGTAAFVDAEHALDPGYAEKLGVNVDDLLVSQPDTGEQALEIADMLV 133          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_SYMTH (Protein recA OS=Symbiobacterium thermophilum GN=recA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.545e-40
Identity = 79/129 (61.24%), Postives = 99/129 (76.74%), Query Frame = 3
Query:  429 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            K  A+  AL QI   FGKGSIM LG  ++  +V V+ TGS ALD+ALG GGLP+GR+ EIYGPE+SGKTT+ALHVIAEAQ+ GG   F+DAEHALDP  A+ +GV  +NLL++QPD GEQAL + +TL+
Sbjct:    7 KQKAIDMALAQIEKQFGKGSIMRLGEQMSRLNVEVIPTGSVALDVALGVGGLPRGRITEIYGPESSGKTTVALHVIAEAQKMGGVAAFVDAEHALDPVYAQALGVDIDNLLVSQPDTGEQALEITETLV 135          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_PARL1 (Protein recA OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=recA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.545e-40
Identity = 81/131 (61.83%), Postives = 99/131 (75.57%), Query Frame = 3
Query:  423 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            S K  AL  AL QI  SFGKGSIM LG++     +  VSTGS  LDIALG GGLP+GR++EIYGPE+SGKTTLAL  +AEAQ+ GG C F+DAEHALDP  A  +GV+ ++LL++QPD GEQAL + DTL+
Sbjct:   13 SDKKKALDAALSQIERSFGKGSIMRLGKNEQIVEIESVSTGSLGLDIALGIGGLPRGRIIEIYGPESSGKTTLALQTVAEAQKSGGVCAFVDAEHALDPIYARKLGVQLDDLLISQPDTGEQALEIADTLV 143          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_LEGPN (Protein recA OS=Legionella pneumophila GN=recA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.545e-40
Identity = 83/135 (61.48%), Postives = 98/135 (72.59%), Query Frame = 3
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            EEN  K   AL  A+ QI   FGKGS+M +G S   R +  +STGS  LDIALG GGLPKGR+VEIYGPE+SGKTTL L VIAE Q+ GG   FIDAEHALDPS A+ +GVK + LL++QPD GEQAL + D L+
Sbjct:    2 EENKQK---ALSAAVSQIERQFGKGSVMRMGDSTVSRDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTGEQALEITDMLV 133          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_RHORT (Protein recA OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=recA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.548e-40
Identity = 79/135 (58.52%), Postives = 103/135 (76.30%), Query Frame = 3
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            +++   K  AL+ A+ QI  +FGKGSIM LG+  +   +  +STGS  LDIALG GGLP+GR+VEIYGPE+SGKTTLALHV+AEAQ++GG C F+DAEHA DP  A  +GV  ++LL++QPD GEQAL + DTL+
Sbjct:   10 DKDTMDKQKALEAAVGQIERAFGKGSIMKLGQRGSVVDIESISTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLALHVVAEAQKKGGQCAFVDAEHAFDPLYARKLGVSLDDLLVSQPDTGEQALEIADTLV 144          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_PARDE (Protein recA OS=Paracoccus denitrificans GN=recA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.548e-40
Identity = 79/135 (58.52%), Postives = 98/135 (72.59%), Query Frame = 3
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            ++  + K  AL  AL QI   FGKGSIM LG       +   STGS  LDIALG GGLPKGR++EI+GPE+SGKTTL LHV+AE Q++GG C F+DAEHALDP  A+ +GV  + LL++QPD GEQAL +VDTL+
Sbjct:   11 DKRSADKQKALDSALAQIERQFGKGSIMKLGADNPVAEIEATSTGSLGLDIALGIGGLPKGRIIEIFGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLV 145          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_DESAH (Protein recA OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=recA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.458e-39
Identity = 82/132 (62.12%), Postives = 101/132 (76.52%), Query Frame = 3
Query:  420 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            +++KD A+Q A+ QI   FGKGSIM LG     + VP++STGS ALD ALG GG P+GRV+EIYGPE+SGKTTLALH +AEAQRQGG   FIDAEHALD + A  +GV  + LL++QPD GEQAL +VD L+
Sbjct:    4 LTEKDKAIQTAMGQIERQFGKGSIMKLGAREI-QAVPIISTGSLALDKALGVGGFPRGRVIEIYGPESSGKTTLALHAVAEAQRQGGIAAFIDAEHALDVAYARRLGVNCDELLVSQPDTGEQALEIVDMLV 134          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_RUBXD (Protein recA OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=recA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.487e-39
Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = 3
Query:  429 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            K  AL  A+ QI   FGKGSIM +G   + + V  +STGS ALD+ALG GG+P+GR+VEI+GPE+SGKTTLALH+IAEAQR GG   FIDAEHALDP+ AE IGV  ENL  +QPD GEQAL + DTL+
Sbjct:    5 KSKALDTAVSQIERQFGKGSIMRMGDRASQK-VASISTGSLALDLALGVGGVPRGRIVEIFGPESSGKTTLALHIIAEAQRAGGLAAFIDAEHALDPTYAEAIGVDLENLYFSQPDSGEQALEIADTLV 132          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_SACD2 (Protein recA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=recA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.248e-39
Identity = 80/131 (61.07%), Postives = 99/131 (75.57%), Query Frame = 3
Query:  423 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            + K  AL+ AL QI   FGKG++M LG     + +P +STGS  LD+ALG GGLPKGR+VEIYGPE+SGKTTL L VIAEAQRQGG C F+DAEHALDP  AE +GV  ++L+++QPD GEQAL + D L+
Sbjct:    3 ASKSKALEAALSQIDRQFGKGTVMRLGDKGREK-MPAISTGSLGLDVALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAEAQRQGGTCAFVDAEHALDPVYAEKLGVNVDDLIISQPDNGEQALEVADMLV 132          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_HELMI (Protein recA OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=recA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.540e-39
Identity = 78/126 (61.90%), Postives = 98/126 (77.78%), Query Frame = 3
Query:  438 ALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            ALQQAL+ I  +FGKGSIM LG +     V V+ TGS ALD+ALG GG+P+GR+VE+YGPE+SGKTT+ALH+IAEAQ+ GG   FIDAEHALDP  A  +GV  +NLL++QPD GEQAL + + L+
Sbjct:   10 ALQQALNSIEKAFGKGSIMRLGEASAKLLVEVIPTGSIALDMALGIGGVPRGRIVEVYGPESSGKTTVALHIIAEAQKMGGMAAFIDAEHALDPVYARNLGVDIDNLLVSQPDTGEQALEICEALV 135          
The following BLAST results are available for this feature:
BLAST of CX674313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_THISH6.545e-4062.22Protein recA OS=Thioalkalivibrio sp. (strain HL-Eb... [more]
RECA_SYMTH6.545e-4061.24Protein recA OS=Symbiobacterium thermophilum GN=re... [more]
RECA_PARL16.545e-4061.83Protein recA OS=Parvibaculum lavamentivorans (stra... [more]
RECA_LEGPN6.545e-4061.48Protein recA OS=Legionella pneumophila GN=recA PE=... [more]
RECA_RHORT8.548e-4058.52Protein recA OS=Rhodospirillum rubrum (strain ATCC... [more]
RECA_PARDE8.548e-4058.52Protein recA OS=Paracoccus denitrificans GN=recA P... [more]
RECA_DESAH1.458e-3962.12Protein recA OS=Desulfobacterium autotrophicum (st... [more]
RECA_RUBXD2.487e-3963.57Protein recA OS=Rubrobacter xylanophilus (strain D... [more]
RECA_SACD23.248e-3961.07Protein recA OS=Saccharophagus degradans (strain 2... [more]
RECA_HELMI5.540e-3961.90Protein recA OS=Heliobacterium modesticaldum (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_5F09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5F09-K17-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674313 ID=CX674313; Name=CX674313; organism=Citrus sinensis; type=EST; length=816bp
GTCACATACAGTGTTTCTGTGTGGGAGTGGGGCACTTGAACCAGAGAAAA
TATTAAAATAGTTTCAGTAAAAAGGGACGGAACCCAAAAGTCCAAAACCC
CCAAAACCCTAAGAACATAAACAATAAACACACCACACGTTCAATACTTT
GGTATTAAATGGAATAAATTGTAGTTGTTCACCATTAATTTTTTTGTTGC
CATTTATTTTTGGTTAGTTTTGGTTTGTGAGTCTCCATGGCGAGGCTCCT
TCGAAACGCTTCTTTACTTAGACGCTGTCTTCTCTCAGTCTCACCACCAC
ACCCACATCCACAGAGCTTTAGGGGAGGGATGTTGGAAACTTCTACTCAG
ATTTGCAACTTTTCTTCCAAAAGTAAAAGAAAGTCTAAGTCTGATGGGAG
TGACTCTGGTGAAGAGAATATGTCCAAGAAAGATCTAGCCCTACAACAAG
CATTGGATCAGATTACTAGCTCATTTGGGAAAGGGTCTATTATGTGGCTT
GGTCGGTCTGTCACTCCCAGACATGTTCCCGTTGTGTCCACAGGTTCTTT
TGCACTTGATATAGCACTAGGAACTGGTGGACTTCCAAAGGGACGTGTTG
TTGAGATATATGGTCCTGAGGCTTCTGGGAAAACAACTCTTGCTCTACAT
GTAATTGCTGAAGCACAAAGACAAGGAGGTTACTGTGTTTTTATCGATGC
TGAGCATGCTCTTGATCCATCTCTAGCTGAGACTATTGGAGTAAAGACAG
AGAATTTGCTTCTTGCACAACCTGATTGTGGTGAACAGGCTCTCAGTCTT
GTGGATACGCTGATCC
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