CX674313

Overview
NameCX674313
Unique NameCX674313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_CAUCN (Protein recA OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=recA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.105e-38
Identity = 81/129 (62.79%), Postives = 97/129 (75.19%), Query Frame = 3
Query:  429 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            K  AL+ AL QI  +FGKGS+M LG       +  VSTGS  LDIALG GGLPKGR+VE+YGPE+SGKTTLALHV+AE Q+ GG   F+DAEHALDPS A  +GV  +NLL++QPD GEQAL + DTL+
Sbjct:   17 KQRALEAALAQIDRAFGKGSVMKLGEKGKVE-IESVSTGSLGLDIALGIGGLPKGRIVEVYGPESSGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAYKLGVNLDNLLVSQPDNGEQALEITDTLV 144          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_RICFE (Protein recA OS=Rickettsia felis GN=recA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.750e-38
Identity = 78/129 (60.47%), Postives = 100/129 (77.52%), Query Frame = 3
Query:  429 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            K+ A+  AL QI  S+GKGS+M LG+      +  VSTGS  LDIALG GG+PKGR++EI+GPE+SGKTTL LH+IAEAQ++GG C FIDAEHALDP+ A+ +GV  + L+++QPD GEQAL + DTLI
Sbjct:    6 KERAIAAALAQIEKSYGKGSVMKLGQRPNI-DIEAVSTGSLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQPDTGEQALEIADTLI 133          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_METCA (Protein recA OS=Methylococcus capsulatus GN=recA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.750e-38
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 3
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            +EN  K   AL  AL QI   FGKGS+M +G     R + V+ TGS ALDIALG GGLP+GR+VEIYGPE+SGKTTL L VIA+AQ+ GG   F+DAEHALDP  AE IGV  ++LL++QPD GEQAL + D L+
Sbjct:    2 DENKRK---ALGAALSQIEKQFGKGSVMRMGDVAAVRDIDVIPTGSLALDIALGCGGLPRGRIVEIYGPESSGKTTLTLEVIAQAQKTGGVAAFVDAEHALDPVYAEKIGVNLDDLLVSQPDTGEQALEIADVLV 133          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_SILPO (Protein recA OS=Silicibacter pomeroyi GN=recA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.591e-38
Identity = 79/129 (61.24%), Postives = 92/129 (71.32%), Query Frame = 3
Query:  429 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            K  AL  AL QI   FGKGSIM LG     + +   STGS  LDIALG GGLP GR+VEIYGPE+SGKTTL LH IAE Q++GG C F+DAEHALDP  A  +GV  + LL++QPD GEQAL + DTL+
Sbjct:    9 KQKALDSALAQIERQFGKGSIMRLGGENAIQEIEASSTGSLGLDIALGIGGLPMGRIVEIYGPESSGKTTLTLHCIAEQQKRGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTGEQALEITDTLV 137          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_RICBR (Protein recA OS=Rickettsia bellii (strain RML369-C) GN=recA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.591e-38
Identity = 78/129 (60.47%), Postives = 100/129 (77.52%), Query Frame = 3
Query:  429 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            K+ A+  AL QI  S+GKGS+M LG+      +  VSTGS  LDIALG GG+PKGR++EI+GPE+SGKTTL LH+IAEAQ++GG C FIDAEHALDP+ A+ +GV  + L+++QPD GEQAL + DTLI
Sbjct:    6 KEKAVAAALAQIEKSYGKGSVMKLGQRPNV-DIESVSTGSLGLDIALGIGGIPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQPDTGEQALEIADTLI 133          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_OCEIH (Protein recA OS=Oceanobacillus iheyensis GN=recA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.591e-38
Identity = 79/132 (59.85%), Postives = 98/132 (74.24%), Query Frame = 3
Query:  420 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            MS +  AL  AL QI   FGKGSIM +G +  P+ +  + +GS ALD+ALG GG P+GRVVEIYGPE+SGKTT+ALH IAEAQ+QGG   FIDAEHALDP  A+ +GV  + LLL+QPD GEQAL + + L+
Sbjct:    1 MSDRKQALDMALRQIEKQFGKGSIMKMGENEIPK-IATIPSGSLALDVALGIGGYPRGRVVEIYGPESSGKTTVALHAIAEAQKQGGQAAFIDAEHALDPVYAKALGVNIDELLLSQPDTGEQALEIAEALV 131          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_NITEC (Protein recA OS=Nitrosomonas eutropha (strain C91) GN=recA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.591e-38
Identity = 80/129 (62.02%), Postives = 96/129 (74.42%), Query Frame = 3
Query:  429 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            K+ AL  AL QI   +GKGSIM LG S   + + VVSTGS +LDIALG GGLP+GR++EIYGPE+SGKTTL L VIAE Q+ GG   FIDAEHALDP  A+ IGV  + LL++QPD GEQAL + D L+
Sbjct:    5 KNKALTAALAQIEKQYGKGSIMRLGDSDVAKDIQVVSTGSLSLDIALGVGGLPRGRIIEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDPQYAQKIGVNVQELLISQPDNGEQALEITDMLV 133          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_MYCGI (Protein recA OS=Mycobacterium gilvum (strain PYR-GCK) GN=recA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.591e-38
Identity = 79/129 (61.24%), Postives = 98/129 (75.97%), Query Frame = 3
Query:  429 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            ++ AL+ AL QI  +FGKGS+M LG  V P  + V+ TGS ALD+ALG GGLP+GRV+EIYGPE+SGKTT+ALH +A AQ  GG   FIDAEHALDP  A+ +GV T+ LL++QPD GEQAL + D LI
Sbjct:    8 REKALELALAQIDKNFGKGSVMRLGEDVRPP-IAVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDALLVSQPDTGEQALEIADMLI 135          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_LISWE (Protein recA OS=Listeria welshimeri GN=recA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.591e-38
Identity = 77/132 (58.33%), Postives = 99/132 (75.00%), Query Frame = 3
Query:  420 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            M+ +  AL QAL QI   FGKGSIM LG   + +++  +S+GS ALDIALG GG P+GR++E+YGPE+SGKTT+ALH IAE Q QGG   FIDAEHALDP+ A+ +GV  + LLL+QPD GEQAL + + L+
Sbjct:    1 MNDRQAALDQALKQIEKQFGKGSIMKLGEH-SDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 131          
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_LISW6 (Protein recA OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=recA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.591e-38
Identity = 77/132 (58.33%), Postives = 99/132 (75.00%), Query Frame = 3
Query:  420 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            M+ +  AL QAL QI   FGKGSIM LG   + +++  +S+GS ALDIALG GG P+GR++E+YGPE+SGKTT+ALH IAE Q QGG   FIDAEHALDP+ A+ +GV  + LLL+QPD GEQAL + + L+
Sbjct:    1 MNDRQAALDQALKQIEKQFGKGSIMKLGEH-SDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 131          
The following BLAST results are available for this feature:
BLAST of CX674313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_CAUCN2.105e-3862.79Protein recA OS=Caulobacter crescentus (strain NA1... [more]
RECA_RICFE2.750e-3860.47Protein recA OS=Rickettsia felis GN=recA PE=3 SV=1[more]
RECA_METCA2.750e-3860.00Protein recA OS=Methylococcus capsulatus GN=recA P... [more]
RECA_SILPO3.591e-3861.24Protein recA OS=Silicibacter pomeroyi GN=recA PE=3... [more]
RECA_RICBR3.591e-3860.47Protein recA OS=Rickettsia bellii (strain RML369-C... [more]
RECA_OCEIH3.591e-3859.85Protein recA OS=Oceanobacillus iheyensis GN=recA P... [more]
RECA_NITEC3.591e-3862.02Protein recA OS=Nitrosomonas eutropha (strain C91)... [more]
RECA_MYCGI3.591e-3861.24Protein recA OS=Mycobacterium gilvum (strain PYR-G... [more]
RECA_LISWE3.591e-3858.33Protein recA OS=Listeria welshimeri GN=recA PE=3 S... [more]
RECA_LISW63.591e-3858.33Protein recA OS=Listeria welshimeri serovar 6b (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_5F09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5F09-K17-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674313 ID=CX674313; Name=CX674313; organism=Citrus sinensis; type=EST; length=816bp
GTCACATACAGTGTTTCTGTGTGGGAGTGGGGCACTTGAACCAGAGAAAA
TATTAAAATAGTTTCAGTAAAAAGGGACGGAACCCAAAAGTCCAAAACCC
CCAAAACCCTAAGAACATAAACAATAAACACACCACACGTTCAATACTTT
GGTATTAAATGGAATAAATTGTAGTTGTTCACCATTAATTTTTTTGTTGC
CATTTATTTTTGGTTAGTTTTGGTTTGTGAGTCTCCATGGCGAGGCTCCT
TCGAAACGCTTCTTTACTTAGACGCTGTCTTCTCTCAGTCTCACCACCAC
ACCCACATCCACAGAGCTTTAGGGGAGGGATGTTGGAAACTTCTACTCAG
ATTTGCAACTTTTCTTCCAAAAGTAAAAGAAAGTCTAAGTCTGATGGGAG
TGACTCTGGTGAAGAGAATATGTCCAAGAAAGATCTAGCCCTACAACAAG
CATTGGATCAGATTACTAGCTCATTTGGGAAAGGGTCTATTATGTGGCTT
GGTCGGTCTGTCACTCCCAGACATGTTCCCGTTGTGTCCACAGGTTCTTT
TGCACTTGATATAGCACTAGGAACTGGTGGACTTCCAAAGGGACGTGTTG
TTGAGATATATGGTCCTGAGGCTTCTGGGAAAACAACTCTTGCTCTACAT
GTAATTGCTGAAGCACAAAGACAAGGAGGTTACTGTGTTTTTATCGATGC
TGAGCATGCTCTTGATCCATCTCTAGCTGAGACTATTGGAGTAAAGACAG
AGAATTTGCTTCTTGCACAACCTGATTGTGGTGAACAGGCTCTCAGTCTT
GTGGATACGCTGATCC
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