CX674306

Overview
NameCX674306
Unique NameCX674306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674306 vs. ExPASy Swiss-Prot
Match: H4_MYTCA (Histone H4 OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.962e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -1 
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX674306 vs. ExPASy Swiss-Prot
Match: H4_MYRRU (Histone H4 OS=Myrmica ruginodis GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.962e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -1 
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX674306 vs. ExPASy Swiss-Prot
Match: H4_MOUSE (Histone H4 OS=Mus musculus GN=Hist1h4a PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.962e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -1 
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX674306 vs. ExPASy Swiss-Prot
Match: H4_MASBA (Histone H4 OS=Mastigamoeba balamuthi PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.962e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -1 
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   27 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLY 104
[Close]
BLAST of CX674306 vs. ExPASy Swiss-Prot
Match: H4_MACFA (Histone H4 OS=Macaca fascicularis GN=QtsA-19327 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.962e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -1 
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX674306 vs. ExPASy Swiss-Prot
Match: H4_HUMAN (Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.962e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -1 
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX674306 vs. ExPASy Swiss-Prot
Match: H4_DROYA (Histone H4 OS=Drosophila yakuba GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.962e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -1 
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX674306 vs. ExPASy Swiss-Prot
Match: H4_DROTE (Histone H4 OS=Drosophila teissieri GN=His4 PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.962e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -1 
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX674306 vs. ExPASy Swiss-Prot
Match: H4_DROSI (Histone H4 OS=Drosophila simulans GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.962e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -1 
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX674306 vs. ExPASy Swiss-Prot
Match: H4_DROSE (Histone H4 OS=Drosophila sechellia GN=His4 PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.962e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -1 
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CX674306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_MYTCA1.962e-3697.44Histone H4 OS=Mytilus californianus PE=3 SV=3[more]
H4_MYRRU1.962e-3697.44Histone H4 OS=Myrmica ruginodis GN=His4 PE=3 SV=2[more]
H4_MOUSE1.962e-3697.44Histone H4 OS=Mus musculus GN=Hist1h4a PE=1 SV=2[more]
H4_MASBA1.962e-3697.44Histone H4 OS=Mastigamoeba balamuthi PE=3 SV=3[more]
H4_MACFA1.962e-3697.44Histone H4 OS=Macaca fascicularis GN=QtsA-19327 PE... [more]
H4_HUMAN1.962e-3697.44Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2[more]
H4_DROYA1.962e-3697.44Histone H4 OS=Drosophila yakuba GN=His4 PE=3 SV=2[more]
H4_DROTE1.962e-3697.44Histone H4 OS=Drosophila teissieri GN=His4 PE=3 SV... [more]
H4_DROSI1.962e-3697.44Histone H4 OS=Drosophila simulans GN=His4 PE=3 SV=... [more]
H4_DROSE1.962e-3697.44Histone H4 OS=Drosophila sechellia GN=His4 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_5F06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5F06-K11-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674306 ID=CX674306; Name=CX674306; organism=Citrus sinensis; type=EST; length=533bp
TTTTTTTGCCTCAAATATAAAGATAAGATTTAACTTGATAGAATTACAAA
GCAGCAACCTAATAACAAACTACTAAGAGCCCCATCTACCAGATCAAGAT
CTAGAGTCAAGATCTATTAACATTCAATTCCAGAACCCTAAGACAATTAA
CCCCCAAATCCATAAAGAGTCCTGCCCTGCCTCTTGAGAGCGTAAACGAC
GTCCATCGCGGTCACGGTCTTTCTCCTGGCGTGCTCAGTGTAGGTCACGG
CGTCACGGATGACGTTCTCCAAGAATATCTTCAGGACGCCACGTGTCTCC
TCGTAGATCAAGCCACTGATACGCTTGACTCCACCTCTACGAGCCAAACG
CCGGATTGCTGGCTTTGTGATACCCTGAATGTTATCGCGAAGCACCTTAC
GGTGACGCTTGGCGCCTCCTTTTCCCAATCCCTTGCCTCCCTTACCGCGC
CCAGACATTTTAGCGAGGAACTTAAAAGACTTTCCGCTGTTCCTTGAAAG
AGAATTTGGATAGAGAAATTTGAATGTGCCCCT
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