CX043280

Overview
NameCX043280
Unique NameCX043280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7725 contig Csv1_Contig7725:535..1264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043280 vs. ExPASy Swiss-Prot
Match: PSBO_VOLCA (Oxygen-evolving enhancer protein 1, chloroplastic OS=Volvox carteri GN=PSBO PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.692e-60
Identity = 117/184 (63.59%), Postives = 133/184 (72.28%), Query Frame = -3
Query:  174 VNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSFSTGKITLSVTKSKPETGEVIGVFESIQPFDTDLGAKVPKDVKIQGIWYAQLEQ 725
            V K    +F  TKLMTRLTYTLD + G  +V  DG+ +  E+DGIDYAA TVQL GGERV FLFTIKQ    G  +N  G+F+VPSYRGSSFLDPKGRGGSTGYDNA+ALPA  R D E+L KEN+K+T    G    SV K    TGE+ GVFESIQP DTDLGAK PKD+KI G+WY QL Q
Sbjct:  112 VFKGGETEFVKTKLMTRLTYTLDAMSGTLKVGSDGSAELKEEDGIDYAATTVQLPGGERVAFLFTIKQFDGKGTLDNIKGDFVVPSYRGSSFLDPKGRGGSTGYDNAVALPA--RADAEELLKENVKSTKALKGSAVFSVAKVNTATGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQLSQ 293          
BLAST of CX043280 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 6.127e-60
Identity = 115/180 (63.89%), Postives = 134/180 (74.44%), Query Frame = -3
Query:  180 KNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSFSTGKITLSVTKSKPETGEVIGVFESIQPFDTDLGAKVPKDVKIQGIWYAQL 719
            K    +F+ TKLMTRLTYTLD I     V  DG+    EKDG+DYAA TVQLAGGERVPFLFTIK L+A G    F G+F VPSYRG++FLDPKGRGG++GYD A+ALPA   GD+E+ AKEN K+T+ S G I   V K   ETGE+ GVFESIQP DTDLGAKVPKD+K  G+WYAQ+
Sbjct:  157 KQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYAATTVQLAGGERVPFLFTIKNLLAKGDAGQFLGQFDVPSYRGATFLDPKGRGGASGYDTAVALPAS--GDDEEYAKENSKSTAASVGTIAFKVAKVNAETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334          
BLAST of CX043280 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.158e-50
Identity = 101/190 (53.16%), Postives = 132/190 (69.47%), Query Frame = -3
Query:  177 NKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKP--------ENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSFSTGKITLSVTKSKPETGEVIGVFESIQPFDTDLGAKVPKDVKIQGIWYAQLE 722
            NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+D+ A+TVQL GGERVPFLFTIK LVA  +P         +F G F VPSYRG++FLDPKGRG  +GYDNA+ALPA  + D+EDL + N+K      GKI+L + K    +GE+ G FES QP DTDLGA  PK+VKI+GI+YA++E
Sbjct:   86 NKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQLPGGERVPFLFTIKNLVAQTQPGLSSLNTSTDFEGTFKVPSYRGAAFLDPKGRGVVSGYDNAVALPA--QADDEDLTRTNVKRAEILNGKISLQIAKVDSSSGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273          
BLAST of CX043280 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.415e-48
Identity = 100/190 (52.63%), Postives = 135/190 (71.05%), Query Frame = -3
Query:  177 NKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSFSTGKITLSVTKSKPETGEVIGVFESIQPFDTDLGAKVPKDVKIQGIWYAQLE 722
            NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT+K LVAS +P         +F GEF VPSYR ++FLDPKGRG ++GYD+AIALP   +  EE+LA+ N+K  S + G+I+L+V K    TGE+ G FES Q  D D+GA  P +VKIQG++YA +E
Sbjct:   84 NKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALP---QAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270          
BLAST of CX043280 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.415e-48
Identity = 100/190 (52.63%), Postives = 135/190 (71.05%), Query Frame = -3
Query:  177 NKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSFSTGKITLSVTKSKPETGEVIGVFESIQPFDTDLGAKVPKDVKIQGIWYAQLE 722
            NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT+K LVAS +P         +F GEF VPSYR ++FLDPKGRG ++GYD+AIALP   +  EE+LA+ N+K  S + G+I+L+V K    TGE+ G FES Q  D D+GA  P +VKIQG++YA +E
Sbjct:   84 NKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALP---QAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270          
BLAST of CX043280 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.949e-47
Identity = 101/190 (53.16%), Postives = 128/190 (67.37%), Query Frame = -3
Query:  180 VNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSFSTGKITLSVTKSKPETGEVIGVFESIQPFDTDLGAKVPKDVKIQGIWYAQL 725
            VNK    ++   KL+TR T +L++I G   V  DG + F E+ GID+  VTVQL GGE+VPF FTIK LV   +P         +F G+F VPSYRG++FLDPKGRG +TGYDNA+ALPA    D+ED A  N+K T    G I+L VTK    TGE+ GVF+S QP DTDLGAK P +VKI+GI+YA++
Sbjct:   86 VNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQLPGGEQVPFFFTIKNLVGKTEPGFSSINSSIDFEGDFRVPSYRGATFLDPKGRGLATGYDNAVALPA--TADKEDYA--NVKQTPIGKGSISLQVTKVDQATGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271          
BLAST of CX043280 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.889e-43
Identity = 90/191 (47.12%), Postives = 120/191 (62.83%), Query Frame = -3
Query:  177 VNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKP--------ENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSFSTGKITLSVTKSKPETGEVIGVFESIQPFDTDLGAKVPKDVKIQGIWYAQLE 725
            VNK    ++   K++TR T +L++I G   V  DGT+ F EKDGID+  +TV L GGE VPF FT+K    + +P         +F G+F VPSYRG+ FLDPK RG  TGYDNA+ALP+       D  + N K T    G ++L VT+    TGE+ G+FES QP DTDLGAK P DVK++GI+Y +++
Sbjct:   86 VNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLLPGGEEVPFFFTVKNFTGTTEPGFTSINSSTDFVGDFNVPSYRGAGFLDPKARGLYTGYDNAVALPSAA-----DKFRTNKKETPLGKGTLSLQVTQVDGSTGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVD 271          
BLAST of CX043280 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.161e-42
Identity = 92/190 (48.42%), Postives = 123/190 (64.74%), Query Frame = -3
Query:  177 NKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVAS--------GKPENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSFSTGKITLSVTKSKPETGEVIGVFESIQPFDTDLGAKVPKDVKIQGIWYAQLE 722
            NK    +F   K++TR T +LD++ G   +  DGT+ F EK GID+ A+TV L GGE VPFLFT+K LVAS            +  G + VPSYR S+FLDPK RG +TGY++A+A+P+   GD EDL KEN+K      G+I+L+V+K    TGEV GVF +IQP DTD+G K   DVK+ G +Y ++E
Sbjct:   86 NKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLLPGGEEVPFLFTVKGLVASTSEPATSINTSTDLRGGYRVPSYRTSNFLDPKARGLTTGYESAVAIPSA--GDAEDLTKENVKRFVTGQGEISLAVSKVDGATGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273          
BLAST of CX043280 vs. ExPASy Swiss-Prot
Match: PSBO_POPEU (Oxygen-evolving enhancer protein 1, chloroplastic (Fragments) OS=Populus euphratica GN=PSBO PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.077e-28
Identity = 79/171 (46.20%), Postives = 84/171 (49.12%), Query Frame = -3
Query:  216 GVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSFSTGKITLSVTKSKPETGEVIGVFESIQPFDTDLGAKVPK 728
            G+NKN+PPDFQ TKLMTR                         DGIDYAAVTVQL GGERVPFLFTIK                               GGSTGYDNA+ALPAGGR                           SKPETGE+IGVFES+QP DTDLGAK PK
Sbjct:   13 GINKNSPPDFQKTKLMTR-------------------------DGIDYAAVTVQLPGGERVPFLFTIK-------------------------------GGSTGYDNAVALPAGGR---------------------------SKPETGEIIGVFESLQPSDTDLGAKTPK 100          
The following BLAST results are available for this feature:
BLAST of CX043280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_VOLCA4.692e-6063.59Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR6.127e-6063.89Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_ANASP1.158e-5053.16Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_THEEB2.415e-4852.63Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN2.415e-4852.63Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA55.949e-4753.16Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY38.889e-4347.12Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE71.161e-4248.42Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_POPEU8.077e-2846.20Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A09-B18-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043280 ID=CX043280; Name=CX043280; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTTTTTTTCAAAATTGCAAGCATTATTATAGCATGCCATGA
TAATATACAGACGTGATAACATTCTCAGTGCTACTAAATTGAATTACAGA
AATGTTTAGCAACACCTTCAACATGTTTCAAAATCTGAATAGGAATAAGT
ACACTCATACAAAAAAAGCTCTATTGCTCAAGCTGTGCATACCAAATACC
CTGGATCTTAACATCCTTTGGAACCTTGGCTCCCAAATCAGTATCAAATG
GCTGAATGCTCTCAAACACTCCAATAACCTCTCCGGTCTCAGGCTTGCTC
TTGGTAACGCTGAGGGTGATCTTCCCTGTTGAAAATGAAGTATTCTTGAT
ATTCTCCTTGGCGAGATCTTCCTCGTCCCCTCTTCCACCGGCAGGCAATG
CAATAGCATTGTCATAACCAGTTGAACCACCCCTTCCCTTTGGGTCCAAG
AAGGATGATCCACGGTAAGATGGTACCAGGAATTCTCCTCCGAAATTCTC
AGGTTTGCCTGATGCTACCAATTGTTTGATGGTGAAAAGGAAGGGCACAC
GCTCGCCTCCAGCCAGCTGAACTGTCACAGCAGCATAGTCAATTCCATCC
TTCTCCACAAACTTAATGGTGCCATCGGGGGACACTTCAAAAGGTCCCTC
AATCTCGTCAAGGGTGTAGGTAAGGCGGGTCATGAGCTTGGTGTTCTGGA
AATCTGGGGGGGCATTCTTGTTGACACCCT
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