CV886054

Overview
NameCV886054
Unique NameCV886054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1B_DROME (Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.863e-25
Identity = 58/87 (66.67%), Postives = 68/87 (78.16%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            VLLDVKPWDDETDMK++E  VR++EM GL WGASKLVPVGYGI K+QIM  I DD VS+D L E+   +E   ++VQS DI AFNKI
Sbjct:  139 VLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKVSIDLLQEK---IEEFEDFVQSVDIAAFNKI 222          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1B2_BOMMO (Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.863e-25
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            +LLDVKPWDDETDMK++E  VR++EM GL WGASKLVPVGYGI K+QIM  I DD VSVD L E+   ++   ++VQS DI AFNKI
Sbjct:  139 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 222          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1D_XENLA (Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.421e-24
Identity = 57/87 (65.52%), Postives = 65/87 (74.71%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            +LLDVKPWDDETDM KLEE VR+V+M GL WG+SKLVPVGYGIKK+QI   + DD V  D L EE   +    +YVQS DI AFNKI
Sbjct:  182 ILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDILEEE---ITKFEDYVQSVDIAAFNKI 265          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1B_XENTR (Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.421e-24
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            +LLDVKPWDDETDM KLEE VRS++M GL WGASKLVPVGYGIKK+QI   + DD V  D ++EE++T     ++VQS D+ AFNKI
Sbjct:  145 ILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQIQCVVEDDKVGTD-VLEENITA--FEDFVQSMDVAAFNKI 228          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1B_BOVIN (Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.856e-24
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T    +EYVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FDEYVQSMDVAAFNKI 225          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1B_MOUSE (Elongation factor 1-beta OS=Mus musculus GN=Eef1b PE=1 SV=5)

HSP 1 Score: 111.694 bits (278), Expect = 5.399e-24
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T     +YVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1B_HUMAN (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 5.399e-24
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T     +YVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1B_CHICK (Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 5.399e-24
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T     +YVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1B_RABIT (Elongation factor 1-beta OS=Oryctolagus cuniculus GN=EEF1B PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.051e-24
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T     +YVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1D_ARTSA (Elongation factor 1-delta OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 9.209e-24
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            +LLD+KPWDDETDM  +E  VRS+ M GL WGASKLVPV +G+KK+QI   + DD VSVD L+E+   +E   +YVQS DI AFNKI
Sbjct:  154 ILLDIKPWDDETDMGAMEREVRSIAMDGLIWGASKLVPVAFGVKKLQISCVVEDDKVSVDELVEK---IEAFEDYVQSVDIAAFNKI 237          
The following BLAST results are available for this feature:
BLAST of CV886054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_DROME2.863e-2566.67Probable elongation factor 1-beta OS=Drosophila me... [more]
EF1B2_BOMMO2.863e-2565.52Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2[more]
EF1D_XENLA1.421e-2465.52Elongation factor 1-delta OS=Xenopus laevis GN=eef... [more]
EF1B_XENTR1.421e-2464.37Elongation factor 1-beta OS=Xenopus tropicalis GN=... [more]
EF1B_BOVIN1.856e-2464.37Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE... [more]
EF1B_MOUSE5.399e-2463.22Elongation factor 1-beta OS=Mus musculus GN=Eef1b ... [more]
EF1B_HUMAN5.399e-2463.22Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2... [more]
EF1B_CHICK5.399e-2463.22Elongation factor 1-beta OS=Gallus gallus GN=EEF1B... [more]
EF1B_RABIT7.051e-2463.22Elongation factor 1-beta OS=Oryctolagus cuniculus ... [more]
EF1D_ARTSA9.209e-2460.92Elongation factor 1-delta OS=Artemia salina PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_020G01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_020_T3_G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886054 ID=CV886054; Name=CV886054; organism=Citrus sinensis; type=EST; length=854bp
CGATTATCCTGTGTTGAAGTTGTGCGCATCTTCTTGCCTCTGCCTTGAAG
ACTAAAATGGCCATCACCTTTTCAGATCTCCACACAGAGTCAGGCCTTAA
GTCTCTTGATCAGTATCTTTCTGGGAAATCTTATATCTCCGGTAATCAAC
TGACAAAAGATGACATCAAGGTCTACGCTGCCGTTTTGGTGAAACCTGCT
GATTCTTTCCCCAACGCCAGCAGGTGGTACGACAGCGTTTCTTCACATAT
CGCCCCAAGCTTCCCTGGCAAAGCCGTTGGTGTGAGAGTTGATGGCAAAG
GTGCTCCAGTTGACGCCGCCGCAGCCAAGCCTGCTGCTGCTGGAGGTGGT
GATGATGATGATTTGGATCTCTTCGGAGATGAGACTGAGGAGGATAAGAA
AGCAGCAGAGGAGAGGGAGGCTGCTAAAAAGCAATCATCCAAGAAGAAAG
AGAGTGGAAAATCATCGGTACTTTTGGATGTAAAGCCTTGGGATGACGAG
ACAGACATGAAAAAGCTAGAAGAGGCAGTTAGGAGTGTTGAGATGCCGGG
TCTCTTTTGGGGAGCATCAAAATTGGTCCCAGTCGGTTATGGGATTAAGA
AGATGCAGATCATGATGACAATCATTGATGATCTTGTTTCTGTGGATTCA
CTCATAGAGGAACACCTCACAGTTGAGCCCTGCAATGAGTATGTTCAGAG
CTGCGACATCGTTGCCTTCAATAAAATTTAAGAATCCTCTCACTGTTTTG
CCTTATAGTGCAGCCATTTTTGGCTGCAATTTAGTTTTTGTCGTTTTAAT
TGTGTTCTGGTTTTTAATGGTTTTGCTTGGCCTGCATTTTCCGTTGCTAA
ATTG
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