CX674301

Overview
NameCX674301
Unique NameCX674301
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674301 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 39/168 (23.21%), Postives = 88/168 (52.38%), Query Frame = 2
Query:  161 IRTSCNSTLYPEICYSTLSRYASTIQQDPAQLASVAIGVTLSKAKRMANYVSNISRQADYGSDQRAAAALHDCFSNFGDAVEEIYGSLKQMRQIRSAGTSRASFRFQMSNVQTWMSAALTDEETCTDGFEDV-------ADGQMKEEVCDRVEYVKKLTSNALALVNR 643
            ++  C+ T +PE C S++S+  S+   DP  L  +++ V + +   +++    +S++ +   D+R  +AL  C     DA++ +  ++  +       T  +S   ++ +++TW+SA +TD ETC D  +++       A+  + + +   +    + TSN+LA+V++
Sbjct:   73 LKAICSVTRFPESCISSISKLPSSNTTDPETLFKLSLKVIIDELDSISDLPEKLSKETE---DERIKSALRVCGDLIEDALDRLNDTVSAIDDEEKKKTLSSS---KIEDLKTWLSATVTDHETCFDSLDELKQNKTEYANSTITQNLKSAMSRSTEFTSNSLAIVSK 234          
The following BLAST results are available for this feature:
BLAST of CX674301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PME1_ARATH8.444e-1123.21Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_5F03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5F03-K5-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674301 ID=CX674301; Name=CX674301; organism=Citrus sinensis; type=EST; length=820bp
CCATTATCTCACACAAACCCAAACAACCATGAAATCCCCACGTCCTCTAA
TTCTTCTCTCATTCCTCTTTTCAACTTTCTTCCTCCAGCTTCATGCAATC
CCCGCCGCAGCCCCCGCAAGCTATCCACCTGACACCGGTTCCGGCAACGG
CACCGACTTCATCCGTACAAGTTGCAACTCAACATTGTACCCCGAAATAT
GCTACTCCACTCTATCCCGCTACGCCAGCACCATCCAGCAGGACCCCGCT
CAGCTTGCCAGCGTAGCCATCGGCGTGACGCTATCCAAAGCCAAGCGCAT
GGCTAATTACGTGTCCAACATCTCCCGCCAAGCCGACTACGGCTCCGACC
AGCGAGCCGCAGCCGCTTTGCACGACTGTTTCTCCAACTTTGGGGACGCA
GTCGAGGAGATTTACGGCTCGCTCAAGCAGATGCGCCAGATTAGGTCGGC
TGGGACTTCCCGGGCCAGCTTTAGGTTTCAGATGAGCAATGTGCAGACGT
GGATGAGCGCCGCGCTGACTGACGAGGAAACGTGCACGGACGGATTTGAG
GATGTGGCTGATGGGCAAATGAAGGAGGAGGTTTGTGACAGGGTTGAGTA
TGTGAAGAAGTTGACGAGCAATGCACTTGCTCTTGTCAATCGTTATGCTG
AGAATGGGATGAACTGAATCGTCATGATGATGACTGGTTTTGGGCCGTTG
GATTTGGTGGCGGGTTAGATAGAACTTAGTTCGTGATTTTGTGATATATA
TATATATATATATTAAGAGTGAGTTAGTTTCGTGTTTATTGTAAATGTTG
TTCTGTTAACATTTTATTTT
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