CX674294

Overview
NameCX674294
Unique NameCX674294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674294 vs. ExPASy Swiss-Prot
Match: IMK2_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.608e-11
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = -2 
Query:  176 TAKGDVYSFGVVLLELLTGKRPTDKDDFGDTNLVGWVKMKVREGKQMEVIDPELLLVTKGTDEAEAEEVKEMVRYLEITFQCVDDFPSKRPNMLQVVAMLRELMP 490
            +AK DVYS G+++LELLTGK P +  +  D  L  WV   V+E    EV D EL+  T+   +       E++  L++   CVD  P+ RP   QVV  L E+ P
Sbjct:  715 SAKTDVYSLGIIILELLTGKSPGEPTNGMD--LPQWVASIVKEEWTNEVFDLELMRETQSVGD-------ELLNTLKLALHCVDPSPAARPEANQVVEQLEEIRP 810
[Close]
BLAST of CX674294 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.566e-11
Identity = 38/112 (33.93%), Postives = 56/112 (50.00%), Query Frame = -2 
Query:  164 RCTAKGDVYSFGVVLLELLTGKRPTDKDDFGD-TNLVGWVKMKVREGKQMEVIDPELLLVTKGTDEAEAEEVKEMVRYLEITFQCVDDFPSKRPNMLQVVAMLRELMPGSAT 496
            + + K DVYSFGV++LELLTGK PT +    +  +L  WV     +    +V DPEL      ++E        M+R L I   C   +P  RP M +V  ++ E+    A+
Sbjct:  515 KISQKADVYSFGVLILELLTGKSPTHQQLHEEGVDLPRWVSSITEQQSPSDVFDPELTRYQSDSNE-------NMIRLLNIGISCTTQYPDSRPTMPEVTRLIEEVSRSPAS 619
The following BLAST results are available for this feature:
BLAST of CX674294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
IMK2_ARATH5.608e-1139.05Probably inactive leucine-rich repeat receptor-lik... [more]
Y5659_ARATH9.566e-1133.93Probable inactive receptor kinase At5g16590 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_5E12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5E12-I23-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674294 ID=CX674294; Name=CX674294; organism=Citrus sinensis; type=EST; length=509bp
TTTTTTTTTTTTTTTTTAAAAACAAAAAACTTGCCAAGTAGATACAATAA
ACTCTTGTACAAGTAAGTGAACAACAAATCTTAACGACCCTTATAATAAT
CTCACTTACACTAATAAGTAAACAATAATATTGTTTAAAATTTCAACCAC
TATTACTGCTTCCAGTGGCTGATCCAGGCATCAACTCCCTTAACATGGCC
ACAACCTGCAGCATATTTGGCCTTTTGGAAGGAAAATCATCAACACACTG
GAATGTTATCTCCAAGTACCTGACCATTTCTTTAACTTCTTCAGCTTCAG
CTTCATCAGTTCCTTTAGTGACCAAAAGCAATTCAGGGTCTATGACTTCC
ATTTGTTTCCCTTCTCTTACCTTCATTTTCACCCACCCCACCAAGTTAGT
GTCCCCAAAATCATCCTTATCCGTGGGGCGTTTTCCAGTCAGCAGTTCCA
GTAGGACAACCCCAAAGGAGTAGACGTCGCCTTTTGCAGTGCACCGGAAG
CTTTGGCCT
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