EY717722

Overview
NameEY717722
Unique NameEY717722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 3.484e-51
Identity = 102/150 (68.00%), Postives = 116/150 (77.33%), Query Frame = 2
Query:  143 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            GA  S P++ F G  LKK  +        S++   FK+ A E+DE KQT QDRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIW  K
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGK 158          

HSP 2 Score: 30.4166 bits (67), Expect = 3.484e-51
Identity = 22/61 (36.07%), Postives = 30/61 (49.18%), Query Frame = 1
Query:  559 LGNLGSKGQGNHSNVTW-FPQDGLNPIMMNAENWKVDMLENP-YIHQARYREAIEFTGRKK 735
            LG  G KGQG        F + G+NPIMM+A   +      P  + + RYREA +   + K
Sbjct:  152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 212          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.312e-50
Identity = 97/149 (65.10%), Postives = 113/149 (75.84%), Query Frame = 2
Query:  143 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            GA  S P+  F G  +K        +K+ S   ++ A   E+D+ KQT  DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIW  K
Sbjct:   10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGK 155          

HSP 2 Score: 33.4982 bits (75), Expect = 1.312e-50
Identity = 22/60 (36.67%), Postives = 30/60 (50.00%), Query Frame = 1
Query:  559 LGNLGSKGQGNHSNVTW-FPQDGLNPIMMNAENWKVDMLENPYIHQARYREAIEFTGRKK 735
            LG  G KGQG        F + G+NPIMM+A   +    E   + + RYREA +   + K
Sbjct:  149 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNGEPAKLIRQRYREAADIINKGK 208          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 5.712e-48
Identity = 102/154 (66.23%), Postives = 116/154 (75.32%), Query Frame = 2
Query:  143 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            GA  S P+ SSF G  L K  VS+ +     S   ++ FK  A  EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN +DG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIW  K
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGK 163          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 3.713e-47
Identity = 91/158 (57.59%), Postives = 112/158 (70.89%), Query Frame = 2
Query:  110 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            A   PL+ NGS A  SVP+S F G+SLKK ++ R P S   S +  +T +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+W  K
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGK 165          

HSP 2 Score: 30.8018 bits (68), Expect = 3.713e-47
Identity = 22/61 (36.07%), Postives = 30/61 (49.18%), Query Frame = 1
Query:  559 LGNLGSKGQGNHSNVTW-FPQDGLNPIMMNAENWKVDMLENP-YIHQARYREAIEFTGRKK 735
            LG  G KGQG        F + G+NPIMM+A   +      P  + + RYREA +   + K
Sbjct:  159 LGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGK 219          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.840e-47
Identity = 94/149 (63.09%), Postives = 111/149 (74.50%), Query Frame = 2
Query:  143 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKQ--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            GA  S P++ F G  LKK V+S +      S + + T    EN   K+  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIW  K
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGK 157          

HSP 2 Score: 30.4166 bits (67), Expect = 4.840e-47
Identity = 22/61 (36.07%), Postives = 30/61 (49.18%), Query Frame = 1
Query:  559 LGNLGSKGQGNHSNVTW-FPQDGLNPIMMNAENWKVDMLENP-YIHQARYREAIEFTGRKK 735
            LG  G KGQG        F + G+NPIMM+A   +      P  + + RYREA +   + K
Sbjct:  151 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGK 211          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.369e-25
Identity = 63/129 (48.84%), Postives = 81/129 (62.79%), Query Frame = 2
Query:  203 SRIPPSKVPSASFKITAEVDENKQTKQDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            +R+    V  A  ++ A      + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIW  K
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGK 140          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.420e-14
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 2
Query:  296 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLR 439
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR 46          
The following BLAST results are available for this feature:
BLAST of EY717722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RCA_ORYSJ3.484e-5168.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.312e-5065.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE5.712e-4866.23Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL3.713e-4757.59Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU4.840e-4763.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.369e-2548.84Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY1.420e-1485.42Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-082-G03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY717722 ID=EY717722; Name=EY717722; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGCACGCACTCAGCGCATTGCTTCGCTTTCCTTTGCCTGCA
TTACAGCGTGACCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCGCT
AGCCTAATGGCTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGC
AACCTCTGTCCCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAA
GCTCAAGGATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACT
GCTGAAGTCGATGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGGCCT
TGCCTACGACGAATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTG
CTGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCT
GTCATGAGTTCTTATGACTACATCAGCCAAGGTCTCCGCACATACAACTT
GGACAACACGATCGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGC
TTGTTGTTCACATCACCAAGAACTTCATGTCCCTGCCCAACATCAAGGTT
CCTCTCATCTTGGGAATTTGGGAAGCAAAGGACAAGGAAATCATTCCAAT
GTGACCTGGTTTCCCCAAGATGGCCTCAACCCAATTATGATGAATGCCGA
AAATTGGAAAGTGGACATGCTTGAAAACCCTTATATTCATCAGGCCAGGT
ACCGTGAAGCAATTGAATTTACAGGAAGGAAAAAAGGGCCCCCTCCTGAT
CATGAATTTTATCCCGGACTCGGCCAATTGGATGCAACAACCAAAAAAAC
TAAAACACCAAATGGTAAAACCTCGCTCTAACATTGTTAGTAACCCATTT
TATGCCAATCCCTATTTTTCAAAGAGAAGGAAACCA
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