CX043278

Overview
NameCX043278
Unique NameCX043278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: NAMA_BACC3 (NADPH dehydrogenase OS=Bacillus cereus (strain 03BB102) GN=namA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.248e-19
Identity = 70/234 (29.91%), Postives = 108/234 (46.15%), Query Frame = 1
Query:    4 HRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSN--QDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 690
            +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +    D       P + T K                  P  +   +I   +  F+ AA  + +AGFD IE+HGAHGYLI++F+    N RTD+YGGS E R RF  EI++++ NE+    + +R+S       + D +P+ L
Sbjct:   18 NRIVMSPMCMYSSENEDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKAELETDALAPSAVPFNETMKI-----------------PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPEKRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGL 226          
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: NAMA_BACAH (NADPH dehydrogenase OS=Bacillus thuringiensis (strain Al Hakam) GN=namA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.248e-19
Identity = 70/234 (29.91%), Postives = 108/234 (46.15%), Query Frame = 1
Query:    4 HRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSN--QDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 690
            +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +    D       P + T K                  P  +   +I   +  F+ AA  + +AGFD IE+HGAHGYLI++F+    N RTD+YGGS E R RF  EI++++ NE+    + +R+S       + D +P+ L
Sbjct:   18 NRIVMSPMCMYSSENEDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKAELETDALAPSAVPFNETMKI-----------------PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPEKRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGL 226          
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: DHTM_METME (Trimethylamine dehydrogenase OS=Methylophilus methylotrophus GN=tmd PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.430e-16
Identity = 51/151 (33.77%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  169 IWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD 621
            IW +  V   K + D VH  G +   ++W+ G      + PN    + S   P  P   A+  +   +   + +   +I Q+   +  AA+ + +AGFD + ++GAH YL  QF+    N RTD+YGGSLENR RF LE +E V + +G+D
Sbjct:   78 IWDEGDVRNLKAMTDEVHKYGALAGVELWYGGA-----HAPN----MESRATPRGPSQYASEFETLSYC--KEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSD 217          
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: BAIH_EUBSP (NADH-dependent flavin oxidoreductase OS=Eubacterium sp. (strain VPI 12708) GN=baiH PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.597e-15
Identity = 63/210 (30.00%), Postives = 92/210 (43.81%), Query Frame = 1
Query:    1 SHRVVLAPLTR--QRSYNNVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLID-QFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD 621
            S+RV +AP++   + +   VP+  A ++  +     G ++ +A  +        +T  +   E V  +K   D V   G     QI H G  S   Y+            PL P    N    A     R +  DEI  I+  F  AAR A EAG   I LH AH Y++   F+    N R D+YGGSL+NR RF +E++E     +  D
Sbjct:   20 SNRVGMAPMSMDYEAADGTVPKRLADVFVRRAEGGTGYVMIDAVTIDSKYPYMGNTTALDRDELVPQFKEFADRVKEAGSTLVPQIIHPGPESVCGYRHIA---------PLGPSANTN----ANCHVSRSISIDEIHDIIKQFGQAARRAEEAGCGAISLHCAHAYMLPGSFLSPLRNKRMDEYGGSLDNRARFVIEMIEEARRNVSPD 216          
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: STCD_RHIME (Probable N-methylproline demethylase OS=Rhizobium meliloti GN=stcD PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.841e-15
Identity = 60/223 (26.91%), Postives = 112/223 (50.22%), Query Frame = 1
Query:   79 YSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWT-----KEQVEAW-KPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRV-GIRLSPFANYMESGDSNPEALGLYMAESLNKYG 726
            Y+    +GG+ +    G +  ++   D+P ++      ++++  W + + DAVH +G +   Q+ H+GR +  D       P+ +         RA          P+++   +I +I+ DF  AA      G DG+EL  A+G+LIDQF     N+    YGGSL+NR RF  ++++A+   +G + + G+R +  A+    G ++ +A GL +++ L + G
Sbjct:   43 YTVERARGGVAMTMTAGSAAVSK---DSPPVFNNLLAYRDEIVPWIREMTDAVHEEGAVIMIQLTHLGRRTRWD--KGDWLPVVAPSHHREAAHRAF---------PKKIEDWDIDRIIKDFADAAERMKAGGMDGVELE-AYGHLIDQFASPLTNELDGPYGGSLDNRMRFCFDVLKAIRARVGDEFILGVRYT--ADECLPGGTD-KAEGLEISKRLKESG 247          
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: DHDM_HYPSX (Dimethylamine dehydrogenase OS=Hyphomicrobium sp. (strain x) GN=dmd PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 45/157 (28.66%), Postives = 74/157 (47.13%), Query Frame = 1
Query:  160 TPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQ---FTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD 621
            T  IW +  +   + +VD VH+ G +  C++++ G        P+  A  S T      Q  +    +     FT       DE+ ++   +  AA  A + GFD + ++GAH Y   Q++    N RTD+YGGS +NR RF +E +E +   +  D
Sbjct:   75 TARIWDQGDMRNLRAMVDHVHSHGSLAGCELFYGG--------PHAPAIESRTISRGPSQYNSEFATVPGCPGFTYNHEADIDELERLQQQYVDAALRARDTGFDLVNVYGAHAYGPMQWLNPYYNRRTDKYGGSFDNRARFWIETLEKIRRAVNDD 223          
The following BLAST results are available for this feature:
BLAST of CX043278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
NAMA_BACC35.248e-1929.91NADPH dehydrogenase OS=Bacillus cereus (strain 03B... [more]
NAMA_BACAH5.248e-1929.91NADPH dehydrogenase OS=Bacillus thuringiensis (str... [more]
DHTM_METME5.430e-1633.77Trimethylamine dehydrogenase OS=Methylophilus meth... [more]
BAIH_EUBSP4.597e-1530.00NADH-dependent flavin oxidoreductase OS=Eubacteriu... [more]
STCD_RHIME7.841e-1526.91Probable N-methylproline demethylase OS=Rhizobium ... [more]
DHDM_HYPSX1.384e-1128.66Dimethylamine dehydrogenase OS=Hyphomicrobium sp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A08-B16-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043278 ID=CX043278; Name=CX043278; organism=Citrus sinensis; type=EST; length=728bp
TCTCATAGAGTTGTTTTGGCACCACTGACTAGACAGAGATCATACAACAA
TGTTCCTCAGCCACATGCCATTTTGTATTACTCTCAAAGAACCACCAAAG
GGGGTTTGCTTATAGCCGAAGCCACTGGAGTTTCCGACACTGCTCAAGGG
TATCCAGATACACCTGGTATCTGGACAAAGGAGCAAGTTGAAGCATGGAA
ACCGATTGTAGATGCTGTTCATGCCAAAGGTGGGATCTTCTTTTGTCAGA
TTTGGCACGTTGGCAGGGTTTCAAATCAAGATTATCAGCCAAATGGTCAA
GCTCCAATTTCCAGTACAGACAAGCCATTGACCCCTCAAATCCGCGCTAA
TGGTGTTGATATTGCACAATTCACTCCTCCAAGGCGGCTAAGGACAGATG
AAATCCCTCAAATTGTGAATGATTTCAGGCTTGCTGCAAGAAACGCAATT
GAGGCTGGTTTTGATGGCATTGAGCTCCACGGTGCACATGGCTACCTAAT
TGACCAATTTATGAAGGATCAAGTGAATGATCGAACAGACCAGTATGGAG
GATCCTTAGAGAATCGTTGCCGTTTTGCTTTAGAAATAGTTGAAGCTGTT
TCCAATGAAATAGGGGCAGATAGGGTTGGGATAAGACTATCTCCGTTTGC
AAACTATATGGAATCAGGAGACTCTAACCCAGAAGCTTTAGGTCTTTACA
TGGCAGAATCCTTGAACAAATATGGTAT
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