CX043277
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_CHLTE (Tryptophan synthase beta chain OS=Chlorobium tepidum GN=trpB-1 PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 1.040e-34 Identity = 78/152 (51.32%), Postives = 96/152 (63.16%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G FG FGGKF+PETL+ + LE E+ D +F + L LR YVGR TPLY A RL+ EK G +I+LKREDL H GAHKINNA+GQ ++AKRMG+K I+A TGAGQHGV V+MG D+ +Q+ V MKLL Sbjct: 14 GHFGTFGGKFIPETLVKNAADLEEEYLKAKNDPEFHQTLDNLLRHYVGRPTPLYHASRLS-----EKQGGAQIWLKREDLCHTGAHKINNALGQVLLAKRMGKKRIIAETGAGQHGVATATVCALFGLDCIVYMGEEDIRRQAPNVARMKLL 160
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF5 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=trpB PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.358e-34 Identity = 77/152 (50.66%), Postives = 100/152 (65.79%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G +G +GG+FV ETLI L LE + +D +F+ EL + LR +VGR PLY A RL+ E G G +IYLKREDLNH GAHKINNA+GQA++A+RMG+K ++A TGAGQHGV V+MG D+++QSS V M+LL Sbjct: 11 GHYGPYGGRFVAETLIPALEELERAYQEAQRDPEFRAELHSELRQFVGRPNPLYHAGRLS----RELG-GAQIYLKREDLNHTGAHKINNAVGQALLARRMGKKRVIAETGAGQHGVATATVATRYGMECLVYMGEEDIQRQSSNVFRMRLL 157
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF2 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=trpB PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.358e-34 Identity = 77/152 (50.66%), Postives = 100/152 (65.79%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G +G +GG+FV ETLI L LE + +D +F+ EL + LR +VGR PLY A RL+ E G G +IYLKREDLNH GAHKINNA+GQA++A+RMG+K ++A TGAGQHGV V+MG D+++QSS V M+LL Sbjct: 11 GHYGPYGGRFVAETLIPALEELERAYQEAQRDPEFRAELHSELRQFVGRPNPLYHAGRLS----RELG-GAQIYLKREDLNHTGAHKINNAVGQALLARRMGKKRVIAETGAGQHGVATATVATRYGMECLVYMGEEDIQRQSSNVFRMRLL 157
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_METRJ (Tryptophan synthase beta chain OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=trpB PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.316e-34 Identity = 70/154 (45.45%), Postives = 100/154 (64.94%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEK--GEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G+FG FGG+FV ETL+ + LEA + +D FQ E+ + Y+GR +PLY+AERLT+H R + G+G ++Y KRE+LNH G+HK+NN +GQ ++A+RMG+ I+A TGAGQHGV V+MG D+ +Q+ V MK+L Sbjct: 18 GRFGIFGGRFVAETLMPLILELEAAYETAKKDPAFQAEMESYGTHYIGRPSPLYYAERLTEHLRAKAPAGQGAKVYFKREELNHTGSHKVNNVLGQILLARRMGKPRIIAETGAGQHGVATATLCARFGLKCVVYMGAVDVARQAPNVFRMKML 171
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ACICJ (Tryptophan synthase beta chain OS=Acidiphilium cryptum (strain JF-5) GN=trpB PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.316e-34 Identity = 84/177 (47.46%), Postives = 105/177 (59.32%), Query Frame = 1 Query: 265 MRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 M KP+ NSL +T D R G+FG FGG+FV ETL+ + LEA + D F E L+ YVGR +PL+FAERLT E G G ++Y KR++LNH GAHKINN IGQ ++AKRMG+ I+A TGAGQHGV V+MG D+E+Q V MKLL Sbjct: 1 MNKPIPNSL--RTLPDDR-------GRFGEFGGRFVAETLMPLILELEAAYEAAKDDPDFMREFQYYLQHYVGRPSPLWFAERLT----KELG-GAKVYFKRDELNHTGAHKINNCIGQILLAKRMGKTRIIAETGAGQHGVATATVAALFGLPCIVYMGATDVERQQPNVFRMKLL 163
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LEGPC (Tryptophan synthase beta chain OS=Legionella pneumophila (strain Corby) GN=trpB PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 3.025e-34 Identity = 77/152 (50.66%), Postives = 96/152 (63.16%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G FG +GG FV +TL++ L LE + D F EL T L+DYVGR PLY A L+ +K G +IYLKREDLNH GAHKINN IGQA++AKRMG+ ++A TGAGQHGV V+MG+ D+++QSS V MKLL Sbjct: 11 GHFGPYGGMFVADTLVSALKQLEHAYTKYRNDQDFLSELHTELKDYVGRPNPLYHAVHLS-----KKIGGAQIYLKREDLNHTGAHKINNTIGQALLAKRMGKTRVIAETGAGQHGVATATVAAKFGFQCVVYMGSEDIKRQSSNVYRMKLL 157
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACSU (Tryptophan synthase beta chain OS=Bacillus subtilis GN=trpB PE=3 SV=2) HSP 1 Score: 145.591 bits (366), Expect = 3.025e-34 Identity = 75/152 (49.34%), Postives = 98/152 (64.47%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G++G FGGKFVPETL+ L ++ F + D F+EE L+DY GR T L +A+R+T++ G +IYLKREDLNH G+HKINNA+GQA++AK+MG+ I+A TGAGQHGV VFMG D+ +QS V MKLL Sbjct: 9 GRYGDFGGKFVPETLMQPLDEIQTAFKQIKDDPAFREEYYKLLKDYSGRPTALTYADRVTEYLG-----GAKIYLKREDLNHTGSHKINNALGQALLAKKMGKTKIIAETGAGQHGVAAATVAAKFGFSCTVFMGEEDVARQSLNVFRMKLL 155
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPS (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain BisB5) GN=trpB PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.951e-34 Identity = 74/152 (48.68%), Postives = 95/152 (62.50%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G FG FGG+FV ETL+ + LE + D F+ E+ L+ YVGR +PLYFAERLT+H+ G +IY KREDLNH GAHK+NN +GQ M+A+RMG++ I+A TGAG HGV V+MG D+E+Q VL MK L Sbjct: 17 GHFGIFGGRFVAETLMPLILELEKAYAEAKDDPAFRTEMDGYLKHYVGRPSPLYFAERLTEHFG-----GAKIYFKREDLNHTGAHKVNNVLGQIMLARRMGKQRIIAETGAGMHGVATATMCAKFGLQCVVYMGAVDVERQQPNVLRMKAL 163
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_RHOP5 (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain BisA53) GN=trpB PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.951e-34 Identity = 81/177 (45.76%), Postives = 101/177 (57.06%), Query Frame = 1 Query: 265 MRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 M PL NS D + G FG FGG+FV ETL+ + LE + D F+ E+ L+ YVGR +PLYFAERLTDH+ G +IY KREDLNH GAHK+NN +GQ M+A+RMG+ I+A TGAG HGV VFMG D+++Q VL MK L Sbjct: 1 MNSPLPNSYRSGPD---------DRGHFGLFGGRFVAETLMPLILDLEKAYAEAKIDPAFRAEMDGHLKHYVGRPSPLYFAERLTDHFG-----GAKIYFKREDLNHTGAHKVNNVLGQIMLARRMGKPRIIAETGAGMHGVATATLCAKFGLKCVVFMGAVDIDRQEPNVLRMKAL 163
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB1_THEMA (Tryptophan synthase beta chain 1 OS=Thermotoga maritima GN=trpB1 PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.951e-34 Identity = 75/152 (49.34%), Postives = 95/152 (62.50%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G FG +GG++VPE L+ L LEA + +++D F +E + LRDY GR TPLYFA RL++ Y G IYLKREDL H GAHKINNAIGQ ++AK+MG+ I+A TGAGQHGV ++MG D +Q V MKLL Sbjct: 3 GYFGPYGGQYVPEILMPALEELEAAYEEIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKY------GARIYLKREDLLHTGAHKINNAIGQVLLAKKMGKTRIIAETGAGQHGVATATAAALFGMECVIYMGEEDTIRQKPNVERMKLL 148 The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 425
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bpback to top |