CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_CHLTE (Tryptophan synthase beta chain OS=Chlorobium tepidum GN=trpB-1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.040e-34
Identity = 78/152 (51.32%), Postives = 96/152 (63.16%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGGKF+PETL+   + LE E+     D +F + L   LR YVGR TPLY A RL+     EK  G +I+LKREDL H GAHKINNA+GQ ++AKRMG+K I+A TGAGQHGV              V+MG  D+ +Q+  V  MKLL
Sbjct:   14 GHFGTFGGKFIPETLVKNAADLEEEYLKAKNDPEFHQTLDNLLRHYVGRPTPLYHASRLS-----EKQGGAQIWLKREDLCHTGAHKINNALGQVLLAKRMGKKRIIAETGAGQHGVATATVCALFGLDCIVYMGEEDIRRQAPNVARMKLL 160          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF5 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=trpB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.358e-34
Identity = 77/152 (50.66%), Postives = 100/152 (65.79%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG+FV ETLI  L  LE  +    +D +F+ EL + LR +VGR  PLY A RL+     E G G +IYLKREDLNH GAHKINNA+GQA++A+RMG+K ++A TGAGQHGV              V+MG  D+++QSS V  M+LL
Sbjct:   11 GHYGPYGGRFVAETLIPALEELERAYQEAQRDPEFRAELHSELRQFVGRPNPLYHAGRLS----RELG-GAQIYLKREDLNHTGAHKINNAVGQALLARRMGKKRVIAETGAGQHGVATATVATRYGMECLVYMGEEDIQRQSSNVFRMRLL 157          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF2 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=trpB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.358e-34
Identity = 77/152 (50.66%), Postives = 100/152 (65.79%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG+FV ETLI  L  LE  +    +D +F+ EL + LR +VGR  PLY A RL+     E G G +IYLKREDLNH GAHKINNA+GQA++A+RMG+K ++A TGAGQHGV              V+MG  D+++QSS V  M+LL
Sbjct:   11 GHYGPYGGRFVAETLIPALEELERAYQEAQRDPEFRAELHSELRQFVGRPNPLYHAGRLS----RELG-GAQIYLKREDLNHTGAHKINNAVGQALLARRMGKKRVIAETGAGQHGVATATVATRYGMECLVYMGEEDIQRQSSNVFRMRLL 157          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_METRJ (Tryptophan synthase beta chain OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=trpB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.316e-34
Identity = 70/154 (45.45%), Postives = 100/154 (64.94%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEK--GEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG FGG+FV ETL+  +  LEA +    +D  FQ E+ +    Y+GR +PLY+AERLT+H R +   G+G ++Y KRE+LNH G+HK+NN +GQ ++A+RMG+  I+A TGAGQHGV              V+MG  D+ +Q+  V  MK+L
Sbjct:   18 GRFGIFGGRFVAETLMPLILELEAAYETAKKDPAFQAEMESYGTHYIGRPSPLYYAERLTEHLRAKAPAGQGAKVYFKREELNHTGSHKVNNVLGQILLARRMGKPRIIAETGAGQHGVATATLCARFGLKCVVYMGAVDVARQAPNVFRMKML 171          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ACICJ (Tryptophan synthase beta chain OS=Acidiphilium cryptum (strain JF-5) GN=trpB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.316e-34
Identity = 84/177 (47.46%), Postives = 105/177 (59.32%), Query Frame = 1
Query:  265 MRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            M KP+ NSL  +T  D R       G+FG FGG+FV ETL+  +  LEA +     D  F  E    L+ YVGR +PL+FAERLT     E G G ++Y KR++LNH GAHKINN IGQ ++AKRMG+  I+A TGAGQHGV              V+MG  D+E+Q   V  MKLL
Sbjct:    1 MNKPIPNSL--RTLPDDR-------GRFGEFGGRFVAETLMPLILELEAAYEAAKDDPDFMREFQYYLQHYVGRPSPLWFAERLT----KELG-GAKVYFKRDELNHTGAHKINNCIGQILLAKRMGKTRIIAETGAGQHGVATATVAALFGLPCIVYMGATDVERQQPNVFRMKLL 163          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LEGPC (Tryptophan synthase beta chain OS=Legionella pneumophila (strain Corby) GN=trpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.025e-34
Identity = 77/152 (50.66%), Postives = 96/152 (63.16%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG +GG FV +TL++ L  LE  +     D  F  EL T L+DYVGR  PLY A  L+     +K  G +IYLKREDLNH GAHKINN IGQA++AKRMG+  ++A TGAGQHGV              V+MG+ D+++QSS V  MKLL
Sbjct:   11 GHFGPYGGMFVADTLVSALKQLEHAYTKYRNDQDFLSELHTELKDYVGRPNPLYHAVHLS-----KKIGGAQIYLKREDLNHTGAHKINNTIGQALLAKRMGKTRVIAETGAGQHGVATATVAAKFGFQCVVYMGSEDIKRQSSNVYRMKLL 157          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACSU (Tryptophan synthase beta chain OS=Bacillus subtilis GN=trpB PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.025e-34
Identity = 75/152 (49.34%), Postives = 98/152 (64.47%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G++G FGGKFVPETL+  L  ++  F  +  D  F+EE    L+DY GR T L +A+R+T++       G +IYLKREDLNH G+HKINNA+GQA++AK+MG+  I+A TGAGQHGV              VFMG  D+ +QS  V  MKLL
Sbjct:    9 GRYGDFGGKFVPETLMQPLDEIQTAFKQIKDDPAFREEYYKLLKDYSGRPTALTYADRVTEYLG-----GAKIYLKREDLNHTGSHKINNALGQALLAKKMGKTKIIAETGAGQHGVAAATVAAKFGFSCTVFMGEEDVARQSLNVFRMKLL 155          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPS (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain BisB5) GN=trpB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.951e-34
Identity = 74/152 (48.68%), Postives = 95/152 (62.50%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG+FV ETL+  +  LE  +     D  F+ E+   L+ YVGR +PLYFAERLT+H+      G +IY KREDLNH GAHK+NN +GQ M+A+RMG++ I+A TGAG HGV              V+MG  D+E+Q   VL MK L
Sbjct:   17 GHFGIFGGRFVAETLMPLILELEKAYAEAKDDPAFRTEMDGYLKHYVGRPSPLYFAERLTEHFG-----GAKIYFKREDLNHTGAHKVNNVLGQIMLARRMGKQRIIAETGAGMHGVATATMCAKFGLQCVVYMGAVDVERQQPNVLRMKAL 163          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_RHOP5 (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain BisA53) GN=trpB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.951e-34
Identity = 81/177 (45.76%), Postives = 101/177 (57.06%), Query Frame = 1
Query:  265 MRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            M  PL NS     D         + G FG FGG+FV ETL+  +  LE  +     D  F+ E+   L+ YVGR +PLYFAERLTDH+      G +IY KREDLNH GAHK+NN +GQ M+A+RMG+  I+A TGAG HGV              VFMG  D+++Q   VL MK L
Sbjct:    1 MNSPLPNSYRSGPD---------DRGHFGLFGGRFVAETLMPLILDLEKAYAEAKIDPAFRAEMDGHLKHYVGRPSPLYFAERLTDHFG-----GAKIYFKREDLNHTGAHKVNNVLGQIMLARRMGKPRIIAETGAGMHGVATATLCAKFGLKCVVFMGAVDIDRQEPNVLRMKAL 163          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB1_THEMA (Tryptophan synthase beta chain 1 OS=Thermotoga maritima GN=trpB1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.951e-34
Identity = 75/152 (49.34%), Postives = 95/152 (62.50%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG +GG++VPE L+  L  LEA +  +++D  F +E +  LRDY GR TPLYFA RL++ Y      G  IYLKREDL H GAHKINNAIGQ ++AK+MG+  I+A TGAGQHGV              ++MG  D  +Q   V  MKLL
Sbjct:    3 GYFGPYGGQYVPEILMPALEELEAAYEEIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKY------GARIYLKREDLLHTGAHKINNAIGQVLLAKKMGKTRIIAETGAGQHGVATATAAALFGMECVIYMGEEDTIRQKPNVERMKLL 148          
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_CHLTE1.040e-3451.32Tryptophan synthase beta chain OS=Chlorobium tepid... [more]
TRPB_ACIF51.358e-3450.66Tryptophan synthase beta chain OS=Acidithiobacillu... [more]
TRPB_ACIF21.358e-3450.66Tryptophan synthase beta chain OS=Acidithiobacillu... [more]
TRPB_METRJ2.316e-3445.45Tryptophan synthase beta chain OS=Methylobacterium... [more]
TRPB_ACICJ2.316e-3447.46Tryptophan synthase beta chain OS=Acidiphilium cry... [more]
TRPB_LEGPC3.025e-3450.66Tryptophan synthase beta chain OS=Legionella pneum... [more]
TRPB_BACSU3.025e-3449.34Tryptophan synthase beta chain OS=Bacillus subtili... [more]
TRPB_RHOPS3.951e-3448.68Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_RHOP53.951e-3445.76Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB1_THEMA3.951e-3449.34Tryptophan synthase beta chain 1 OS=Thermotoga mar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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