CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PSESH (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. phaseolicola GN=trpB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.160e-34
Identity = 73/152 (48.03%), Postives = 96/152 (63.16%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG++V ETL+  +  L  E+     D +F +E++   RDYVGR  PLYFAERLT+       +G +IY KRE+LNH GAHKINN IGQ ++AKRMG+K ++A TGAG HGV              ++MG  D+E+Q + V  MKLL
Sbjct:   14 GLFGSFGGRYVAETLMPLVLDLNREYEAAKADPEFAKEMAYFQRDYVGRPNPLYFAERLTEFC-----DGAKIYFKREELNHTGAHKINNCIGQVLLAKRMGKKRLIAETGAGMHGVATATVAARFGLPCVIYMGATDIERQQANVFRMKLL 160          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PSE14 (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=trpB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.160e-34
Identity = 73/152 (48.03%), Postives = 96/152 (63.16%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG++V ETL+  +  L  E+     D +F +E++   RDYVGR  PLYFAERLT+       +G +IY KRE+LNH GAHKINN IGQ ++AKRMG+K ++A TGAG HGV              ++MG  D+E+Q + V  MKLL
Sbjct:   14 GLFGSFGGRYVAETLMPLVLDLNREYEAAKADPEFAKEMAYFQRDYVGRPNPLYFAERLTEFC-----DGAKIYFKREELNHTGAHKINNCIGQVLLAKRMGKKRLIAETGAGMHGVATATVAARFGLPCVIYMGATDIERQQANVFRMKLL 160          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_THET8 (Tryptophan synthase beta chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=trpB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.739e-34
Identity = 72/152 (47.37%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG +GG++VPETLI  L  LEA +    +D  F EEL   LR + GR TPLY A+RL++++      G +++LKREDL H GAHKINN +GQA++A+RMG++ ++A TGAGQHGV              V+MG  D+ +Q+  V  MKLL
Sbjct:   28 GRFGPYGGRYVPETLIPALEELEAAYREAKKDPAFLEELDHYLRQFAGRPTPLYHAKRLSEYWG-----GAQVFLKREDLLHTGAHKINNTLGQALLARRMGKRRVIAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLL 174          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_THET2 (Tryptophan synthase beta chain OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=trpB PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.739e-34
Identity = 72/152 (47.37%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG +GG++VPETLI  L  LEA +    +D  F EEL   LR + GR TPLY A+RL++++      G +++LKREDL H GAHKINN +GQA++A+RMG++ ++A TGAGQHGV              V+MG  D+ +Q+  V  MKLL
Sbjct:   14 GRFGPYGGRYVPETLIPALEELEAAYREAKKDPAFLEELDHYLRQFAGRPTPLYHAKRLSEYWG-----GAQVFLKREDLLHTGAHKINNTLGQALLARRMGKRRVIAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLL 160          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LEGPL (Tryptophan synthase beta chain OS=Legionella pneumophila (strain Lens) GN=trpB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.739e-34
Identity = 77/152 (50.66%), Postives = 95/152 (62.50%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG +GG FV +TL+  L  LE  +     D  F  EL T L+DYVGR  PLY A  L+     +K  G +IYLKREDLNH GAHKINN IGQA++AKRMG+  ++A TGAGQHGV              V+MG+ D+++QSS V  MKLL
Sbjct:   11 GHFGPYGGMFVADTLVHALKQLEHAYTKYRNDQDFLSELHTELKDYVGRPNPLYHAVHLS-----KKIGGAQIYLKREDLNHTGAHKINNTIGQALLAKRMGKTRVIAETGAGQHGVATATVAAKFGFQCVVYMGSEDIKRQSSNVYRMKLL 157          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LEGPH (Tryptophan synthase beta chain OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=trpB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.739e-34
Identity = 77/152 (50.66%), Postives = 95/152 (62.50%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG +GG FV +TL+  L  LE  +     D  F  EL T L+DYVGR  PLY A  L+     +K  G +IYLKREDLNH GAHKINN IGQA++AKRMG+  ++A TGAGQHGV              V+MG+ D+++QSS V  MKLL
Sbjct:   11 GHFGPYGGMFVADTLVHALKQLEHAYTKYRNDQDFLSELHTELKDYVGRPNPLYHAVHLS-----KKIGGAQIYLKREDLNHTGAHKINNTIGQALLAKRMGKTRVIAETGAGQHGVATATVAAKFGFQCVVYMGSEDIKRQSSNVYRMKLL 157          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LEGPA (Tryptophan synthase beta chain OS=Legionella pneumophila (strain Paris) GN=trpB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.739e-34
Identity = 77/152 (50.66%), Postives = 95/152 (62.50%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG +GG FV +TL+  L  LE  +     D  F  EL T L+DYVGR  PLY A  L+     +K  G +IYLKREDLNH GAHKINN IGQA++AKRMG+  ++A TGAGQHGV              V+MG+ D+++QSS V  MKLL
Sbjct:   11 GHFGPYGGMFVADTLVHALKQLEHAYTKYRNDQDFLSELHTELKDYVGRPNPLYHAVHLS-----KKIGGAQIYLKREDLNHTGAHKINNTIGQALLAKRMGKTRVIAETGAGQHGVATATVAAKFGFQCVVYMGSEDIKRQSSNVYRMKLL 157          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_FUSNN (Tryptophan synthase beta chain OS=Fusobacterium nucleatum subsp. nucleatum GN=trpB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.739e-34
Identity = 73/152 (48.03%), Postives = 96/152 (63.16%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG +VPE +   L  LE  +N    D +F +E    L++Y GRETPLYFAE LT++       G +IYLKREDLNH+GAHK+NN IGQ ++AKRMG+K ++A TGAGQHGV              ++MG  D+E+Q   V  M++L
Sbjct:    8 GYFGEFGGSYVPEVVQKALDKLEEAYNKYKDDEEFLKEYHHYLKNYSGRETPLYFAESLTNYLG-----GAKIYLKREDLNHLGAHKLNNVIGQILLAKRMGKKKVIAETGAGQHGVATAAAAAKFGMQCDIYMGALDVERQRLNVFRMEIL 154          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_EXIS2 (Tryptophan synthase beta chain OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=trpB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.739e-34
Identity = 73/152 (48.03%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G++G +GG+++PETL+  +  LE  +  V +D  F+E ++  L +YVGR+TPLY+AE LT         G +IYLKREDLNH GAHKINN IGQA++A+RMG++ IVA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   11 GQYGIYGGRYIPETLMQAVLELEQAYAEVKEDPAFRERMNDLLENYVGRQTPLYYAEHLTRTIG-----GAKIYLKREDLNHTGAHKINNTIGQALLAERMGKRKIVAETGAGQHGVATATVCALLDLECVIFMGEEDIRRQELNVFRMELL 157          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_DINSH (Tryptophan synthase beta chain OS=Dinoroseobacter shibae (strain DFL 12) GN=trpB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.739e-34
Identity = 79/177 (44.63%), Postives = 105/177 (59.32%), Query Frame = 1
Query:  265 MRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            M   LINS +   D +         G+FG FGG+FV ETL+  +  LE ++ F   D  F +E+      YVGR +PLYFAERLT     E+  G ++YLKR++LNH GAHKINN +GQ ++A+RMG+  I+A TGAGQHGV              V+MG  D+E+Q+  V  MKLL
Sbjct:    1 MPDDLINSFMTGPDEN---------GRFGDFGGRFVSETLMPLILELERQYEFAKTDQAFWDEMHHLWTHYVGRPSPLYFAERLT-----ERLGGAKVYLKRDELNHTGAHKINNVLGQIILARRMGKTRIIAETGAGQHGVATATVCAKFGLKCVVYMGAHDVERQAPNVFRMKLL 163          
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_PSESH5.160e-3448.03Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_PSE145.160e-3448.03Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_THET86.739e-3447.37Tryptophan synthase beta chain OS=Thermus thermoph... [more]
TRPB_THET26.739e-3447.37Tryptophan synthase beta chain OS=Thermus thermoph... [more]
TRPB_LEGPL6.739e-3450.66Tryptophan synthase beta chain OS=Legionella pneum... [more]
TRPB_LEGPH6.739e-3450.66Tryptophan synthase beta chain OS=Legionella pneum... [more]
TRPB_LEGPA6.739e-3450.66Tryptophan synthase beta chain OS=Legionella pneum... [more]
TRPB_FUSNN6.739e-3448.03Tryptophan synthase beta chain OS=Fusobacterium nu... [more]
TRPB_EXIS26.739e-3448.03Tryptophan synthase beta chain OS=Exiguobacterium ... [more]
TRPB_DINSH6.739e-3444.63Tryptophan synthase beta chain OS=Dinoroseobacter ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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