CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043277_ssr33 microsatellite CX043277_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3563 contig Csv1_Contig3563:1..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROMS (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain AS9601) GN=trpB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.958e-39
Identity = 81/152 (53.29%), Postives = 107/152 (70.39%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG++GG++VPETL+  L  LE   +   +D  F EEL+  L+ YVGRETPLY A+RLT+HY+N++   P I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV              ++MG  D+++QS  V  MKLL
Sbjct:   24 GRFGKYGGQYVPETLMPALFELEDAASNAWKDKLFVEELNHLLKTYVGRETPLYEAKRLTEHYKNKQAT-PRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGLKCIIYMGAEDIKRQSLNVFRMKLL 174          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_CLOAB (Tryptophan synthase beta chain OS=Clostridium acetobutylicum GN=trpB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.958e-39
Identity = 79/152 (51.97%), Postives = 102/152 (67.11%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG+FGG++VPETL+  ++ LE EFN  + D KF  E    L  YVGRETPLYFAE +T +       G +IYLKREDLNH G+HK+NNA+GQ ++AKRMG+K ++A TGAGQHGV              VFMG  D+E+Q+  V  MK+L
Sbjct:    3 GRFGKFGGQYVPETLMNAINELEVEFNKAINDEKFMMEYKYYLEKYVGRETPLYFAENMTKNLG-----GAKIYLKREDLNHTGSHKLNNALGQVLLAKRMGKKRVIAETGAGQHGVATATAAALFGLECEVFMGAEDVERQALNVFRMKIL 149          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROMM (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9313) GN=trpB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.087e-39
Identity = 83/152 (54.61%), Postives = 100/152 (65.79%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGR+GG++VPETL+  L+ LE       +D  F  EL   LR YVGR TPLY AERLT HY    G GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV              V+MG  DM +Q+  V  M+LL
Sbjct:   44 GRFGRYGGQYVPETLMPALAELEQAAALAWKDPAFTAELDRLLRSYVGRATPLYEAERLTAHYCRSDG-GPRIWLKREDLNHTGAHKINNALGQALLALRMGKKRIIAETGAGQHGVATATVCARFGLECVVYMGAEDMRRQALNVFRMRLL 194          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS9 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9902) GN=trpB PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.550e-38
Identity = 82/152 (53.95%), Postives = 101/152 (66.45%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGRFGG++VPETL+  L+ LE        D  F   L+  L+ YVGR TPLY AERLT HYR + G GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV              ++MG  DM +Q+  V  M+LL
Sbjct:   26 GRFGRFGGQYVPETLMPALAELEQSAAQAWADPAFTGRLNHLLKTYVGRATPLYEAERLTAHYRRDDG-GPRIWLKREDLNHTGAHKINNALGQALLALRMGKKRIIAETGAGQHGVATATVCARFGLDCVIYMGAEDMRRQALNVFRMRLL 176          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS3 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9311) GN=trpB PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.550e-38
Identity = 81/152 (53.29%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G++GR+GG++VPETL+  L+ LE       +D+ F  EL+  L+ YVGR TPLY AERL+ HYR   G GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV              V+MG  DM +Q+  V  M+LL
Sbjct:   26 GRYGRYGGQYVPETLMPALAELEQAAAEAWKDSAFTTELNRLLKSYVGRATPLYEAERLSAHYRRSDG-GPRIWLKREDLNHTGAHKINNALGQALLALRMGKKRIIAETGAGQHGVATATVCARFGLECVVYMGAEDMRRQALNVFRMRLL 176          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRTD (Tryptophan synthase beta chain OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=trpB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.024e-38
Identity = 79/152 (51.97%), Postives = 104/152 (68.42%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+T +  L+  +    +D+ FQ EL   L++YVGRETPLY A+RLTDH       G +IYLKREDLNH GAHKINNA+GQ ++AKRMG+K I+A TGAGQHGV              ++MG  D+++Q+  V  M+LL
Sbjct:   10 GFYGKFGGQFVPETLMTAVIELDKAYREAKEDSSFQAELDDLLKNYVGRETPLYHAKRLTDHIG-----GAQIYLKREDLNHTGAHKINNALGQVLLAKRMGKKKIIAETGAGQHGVATATAAALFDMDCTIYMGEEDVKRQALNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROM0 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9301) GN=trpB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.024e-38
Identity = 80/152 (52.63%), Postives = 106/152 (69.74%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG++GG++VPETL+  L  LE   +   +D  F EEL+  L+ YVGRETPLY A+RLT+HY+ ++   P I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV              ++MG  D+++QS  V  MKLL
Sbjct:   24 GRFGKYGGQYVPETLMPALFELETAASNAWKDKLFVEELNHLLKTYVGRETPLYEAKRLTEHYKTKQAT-PRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGLKCIIYMGAEDIKRQSLNVFRMKLL 174          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRMU (Tryptophan synthase beta chain OS=Streptococcus mutans GN=trpB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.453e-38
Identity = 79/154 (51.30%), Postives = 102/154 (66.23%), Query Frame = 1
Query:  334 NPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            N G +G FGG+F+PETL+T +  L+  +     D  F EEL   L+DYVGRETPLYFA+RLTD+       G +IYLKREDLNH GAHKINNA+GQ ++AKRMG+  I+A TGAGQHGV              ++MG  D+++Q+  V  M+LL
Sbjct:    8 NNGFYGNFGGQFIPETLMTAVIELDEAYREAKADPSFHEELDALLKDYVGRETPLYFAKRLTDYIG-----GAKIYLKREDLNHTGAHKINNALGQVLLAKRMGKNKIIAETGAGQHGVATATAAALFDMECTIYMGEEDVKRQALNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRT2 (Tryptophan synthase beta chain OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.890e-38
Identity = 78/152 (51.32%), Postives = 104/152 (68.42%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+T +  L+  +    +D+ FQ EL   L++YVGRETPLY A+RLTDH       G +IYLKREDLNH GAHKINNA+GQ ++AKRMG+K I+A TGAGQHGV              +++G  D+++Q+  V  M+LL
Sbjct:   10 GFYGKFGGQFVPETLMTAVIELDKAYREAKEDSSFQAELDDLLKNYVGRETPLYHAKRLTDHIG-----GAQIYLKREDLNHTGAHKINNALGQVLLAKRMGKKKIIAETGAGQHGVATATAAALFDMDCTIYVGEEDVKRQALNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRZT (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.693e-38
Identity = 80/152 (52.63%), Postives = 101/152 (66.45%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+T +  LE  +     D  FQEEL+  LR YVGRETPLY+A+ LT H       G +IYLKREDLNH GAHKINNA+GQ  +AKRMG+K I+A TGAGQHGV              ++MG  D+++Q+  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHIG-----GAKIYLKREDLNHTGAHKINNALGQVWLAKRMGKKKIIAETGAGQHGVATATAAALFNMECTIYMGEEDVKRQALNVFRMELL 156          
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_PROMS6.958e-3953.29Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_CLOAB6.958e-3951.97Tryptophan synthase beta chain OS=Clostridium acet... [more]
TRPB_PROMM9.087e-3954.61Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNS91.550e-3853.95Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_SYNS31.550e-3853.29Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_STRTD2.024e-3851.97Tryptophan synthase beta chain OS=Streptococcus th... [more]
TRPB_PROM02.024e-3852.63Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_STRMU3.453e-3851.30Tryptophan synthase beta chain OS=Streptococcus mu... [more]
TRPB_STRT25.890e-3851.32Tryptophan synthase beta chain OS=Streptococcus th... [more]
TRPB_STRZT7.693e-3852.63Tryptophan synthase beta chain OS=Streptococcus pn... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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