CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_KLEP3 (Tryptophan synthase beta chain OS=Klebsiella pneumoniae (strain 342) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.100e-27
Identity = 68/155 (43.87%), Postives = 88/155 (56.77%), Query Frame = 1
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D  FQ E +  L++Y GR T L     LT+      G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPAFQAEFTDLLKNYAGRPTALTKCRNLTE------GTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ENT38 (Tryptophan synthase beta chain OS=Enterobacter sp. (strain 638) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.100e-27
Identity = 68/155 (43.87%), Postives = 88/155 (56.77%), Query Frame = 1
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D  FQ E +  L++Y GR T L     LT+      G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPAFQAEFTDLLKNYAGRPTALTKCRNLTE------GTKTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALACALLGLKCRIYMGAKDIERQSPNVFRMRLM 152          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ELUMP (Tryptophan synthase beta chain OS=Elusimicrobium minutum (strain Pei191) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.100e-27
Identity = 64/152 (42.11%), Postives = 93/152 (61.18%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG FVP+ LI  L+ +   FN      +FQ+EL    ++YVGR +PLY+A  ++         G +IYLKREDLNH GAHKIN+ IG+ ++AK+MG+K ++A TGAGQHG+              ++MG  D++K+   VL +K L
Sbjct:   22 GFYGIYGGVFVPKELIVPLAEIADCFNNTAFTKEFQDELFYYYKNYVGRPSPLYYAANISCG-------GAKIYLKREDLNHTGAHKINHCIGEVLLAKKMGKKRVIAETGAGQHGIAIATAAALLGIECVIYMGEQDVKKEYPNVLKIKTL 166          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_CLAMS (Tryptophan synthase beta chain OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.100e-27
Identity = 64/150 (42.67%), Postives = 86/150 (57.33%), Query Frame = 1
Query:  346 FGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            FG FGG++VPE+L+  L  L A +  +  D  F EEL    R Y GR + +    R  +H       G  I LKREDLNH G+HKINN +GQA++ K++G+K I+A TGAGQHGV              ++MG  D E+Q+  V  M+LL
Sbjct:   12 FGEFGGRYVPESLVAALDELSAAWEELKVDPAFVEELKELHRTYTGRPSLITEVPRFAEH-----AGGARIILKREDLNHTGSHKINNVLGQALLTKKIGKKRIIAETGAGQHGVATATAAALFGLDCVIYMGEVDTERQALNVARMRLL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHEON (Tryptophan synthase beta chain OS=Shewanella oneidensis GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 68/156 (43.59%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  328 KLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            KLNP  FG +GG +VP+ L+  L  LE+ F     D  FQ E +  L++Y GR T L     L+ +         +IYLKREDL H GAHK N  +GQA++AKRMG+K I+A TGAGQHGV              V+MG  D+ +QS  V  M+L+
Sbjct:    5 KLNP-YFGEYGGMYVPQILVPALKQLESAFVEAQTDESFQAEFTDLLKNYAGRPTALTLTRNLSPNPM------VKIYLKREDLLHGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATALACALLGLKCKVYMGAKDVARQSPNVFRMRLM 153          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALTY (Tryptophan synthase beta chain OS=Salmonella typhimurium GN=trpB PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALTI (Tryptophan synthase beta chain OS=Salmonella typhi GN=trpB PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALSV (Tryptophan synthase beta chain OS=Salmonella schwarzengrund (strain CVM19633) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALPK (Tryptophan synthase beta chain OS=Salmonella paratyphi A (strain AKU_12601) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALPC (Tryptophan synthase beta chain OS=Salmonella paratyphi C (strain RKS4594) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152          
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_KLEP32.100e-2743.87Tryptophan synthase beta chain OS=Klebsiella pneum... [more]
TRPB_ENT382.100e-2743.87Tryptophan synthase beta chain OS=Enterobacter sp.... [more]
TRPB_ELUMP2.100e-2742.11Tryptophan synthase beta chain OS=Elusimicrobium m... [more]
TRPB_CLAMS2.100e-2742.67Tryptophan synthase beta chain OS=Clavibacter mich... [more]
TRPB_SHEON2.742e-2743.59Tryptophan synthase beta chain OS=Shewanella oneid... [more]
TRPB_SALTY2.742e-2742.58Tryptophan synthase beta chain OS=Salmonella typhi... [more]
TRPB_SALTI2.742e-2742.58Tryptophan synthase beta chain OS=Salmonella typhi... [more]
TRPB_SALSV2.742e-2742.58Tryptophan synthase beta chain OS=Salmonella schwa... [more]
TRPB_SALPK2.742e-2742.58Tryptophan synthase beta chain OS=Salmonella parat... [more]
TRPB_SALPC2.742e-2742.58Tryptophan synthase beta chain OS=Salmonella parat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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