CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALPB (Tryptophan synthase beta chain OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALPA (Tryptophan synthase beta chain OS=Salmonella paratyphi A GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALNS (Tryptophan synthase beta chain OS=Salmonella newport (strain SL254) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALHS (Tryptophan synthase beta chain OS=Salmonella heidelberg (strain SL476) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALG2 (Tryptophan synthase beta chain OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALEP (Tryptophan synthase beta chain OS=Salmonella enteritidis PT4 (strain P125109) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALDC (Tryptophan synthase beta chain OS=Salmonella dublin (strain CT_02021853) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALCH (Tryptophan synthase beta chain OS=Salmonella choleraesuis GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALA4 (Tryptophan synthase beta chain OS=Salmonella agona (strain SL483) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L+ LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_HALVO (Tryptophan synthase beta chain OS=Halobacterium volcanii GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 66/153 (43.14%), Postives = 92/153 (60.13%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLS-LLEAEFNFVLQDTK-FQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKL 792
            GKFG +GG++VPE L+  +  L +A   +VL +   F ++    LRD+ GR TPL  A+RL++ Y  E      +YLKREDL H GAHK+NNA+GQ ++AK MG++ I+A TGAGQHG               ++MG  D+ +Q   V  MKL
Sbjct:    5 GKFGDYGGQYVPEALMPAIEELTDAYERYVLDNEDGFMDDFRARLRDFGGRPTPLQRADRLSERYDRE------VYLKREDLLHGGAHKLNNALGQVLLAKYMGKERIIAETGAGQHGTATAMACAHLDMPCEIYMGERDINRQRPNVFRMKL 151
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_SALPB2.742e-2742.58Tryptophan synthase beta chain OS=Salmonella parat... [more]
TRPB_SALPA2.742e-2742.58Tryptophan synthase beta chain OS=Salmonella parat... [more]
TRPB_SALNS2.742e-2742.58Tryptophan synthase beta chain OS=Salmonella newpo... [more]
TRPB_SALHS2.742e-2742.58Tryptophan synthase beta chain OS=Salmonella heide... [more]
TRPB_SALG22.742e-2742.58Tryptophan synthase beta chain OS=Salmonella galli... [more]
TRPB_SALEP2.742e-2742.58Tryptophan synthase beta chain OS=Salmonella enter... [more]
TRPB_SALDC2.742e-2742.58Tryptophan synthase beta chain OS=Salmonella dubli... [more]
TRPB_SALCH2.742e-2742.58Tryptophan synthase beta chain OS=Salmonella chole... [more]
TRPB_SALA42.742e-2742.58Tryptophan synthase beta chain OS=Salmonella agona... [more]
TRPB_HALVO2.742e-2743.14Tryptophan synthase beta chain OS=Halobacterium vo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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